View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3701_low_7 (Length: 480)

Name: NF3701_low_7
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3701_low_7
NF3701_low_7
[»] chr4 (12 HSPs)
chr4 (315-466)||(37809677-37809828)
chr4 (372-466)||(37646170-37646264)
chr4 (18-116)||(37809333-37809431)
chr4 (372-466)||(37814579-37814673)
chr4 (315-466)||(37635767-37635919)
chr4 (35-112)||(37646380-37646457)
chr4 (35-112)||(37814386-37814463)
chr4 (232-299)||(37814480-37814547)
chr4 (232-299)||(37646296-37646363)
chr4 (114-181)||(37809461-37809529)
chr4 (249-316)||(37635950-37636017)
chr4 (31-64)||(51590193-51590226)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 315 - 466
Target Start/End: Original strand, 37809677 - 37809828
Alignment:
Q  315 actcttttctgactgattttgcaactgcacaacaatccttatgcactaaaaggaaccaaaacgaaaagaaaccaacaaggattgcagaatttaaaaacca 414  Q
    |||||||| ||||||||| ||  ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  37809677 actcttttttgactgattctgagactgcacgacattccttatgcactaaaaggaaccaaaatgaaaagaaaccaacaacgattgcaaaatttaaaaacca 37809776  T
Q  415 aactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaa 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37809777 aactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaa 37809828  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 37646264 - 37646170
Alignment:
Q  372 aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaa 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37646264 aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaa 37646170  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 37809333 - 37809431
Alignment:
Q  18 agatgttctttattgaatctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact 116  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37809333 agatgttcttaattgaatctgtattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact 37809431  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 372 - 466
Target Start/End: Original strand, 37814579 - 37814673
Alignment:
Q  372 aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaa 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37814579 aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaa 37814673  T

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Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 315 - 466
Target Start/End: Complemental strand, 37635919 - 37635767
Alignment:
Q  315 actcttttctgactgattttgcaactgcacaacaatccttatgcactaaaaggaacc---aaaacgaaaagaaaccaacaaggattgcagaatttaaaaa 411  Q
    |||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||   ||||||||||||||||||||  ||||||||||||||||||    
T  37635919 actcttttgtgactgaatctgcaactgcacgacattccttatgcactaaaaggaaccaaaaaaacgaaaagaaaccaacagagattgcagaatttaaaaa 37635820  T
Q  412 ccaaactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaa 466  Q
    || ||||||   ||||||| ||||||||| |||||||||||||||||||||||||    
T  37635819 cccaactac--gtatagaactatagatgtcaaggtaaagaaaattaagaagtaaa 37635767  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 37646457 - 37646380
Alignment:
Q  35 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37646457 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat 37646380  T

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Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 37814386 - 37814463
Alignment:
Q  35 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37814386 tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat 37814463  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 37814480 - 37814547
Alignment:
Q  232 atgccaaactctagcatcaagatttttaatcaaactctcttagaacactttcgatccctagtatcaca 299  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  37814480 atgccaaactctagcatcaagattcttaatcaaactctctgagaacactttcaatccctagtatcaca 37814547  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 37646363 - 37646296
Alignment:
Q  232 atgccaaactctagcatcaagatttttaatcaaactctcttagaacactttcgatccctagtatcaca 299  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||    
T  37646363 atgccaaactctagcatcaagattcttaatcaaactctctgagaacactttcaatccatagtatcaca 37646296  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 37809461 - 37809529
Alignment:
Q  114 actaactgcctaactccctaactgtcatctgtt-agtaaagttagttagaatgcagtcagttagttaca 181  Q
    |||||||||| |||||||||||||||| | ||| || |||||| ||||||||||| |||||||||||||    
T  37809461 actaactgccgaactccctaactgtcagccgtttagaaaagttggttagaatgcaatcagttagttaca 37809529  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 37636017 - 37635950
Alignment:
Q  249 caagatttttaatcaaactctcttagaacactttcgatccctagtatcacagtttggttaaccaatac 316  Q
    ||||||| ||||||||||| |||    ||||||| |||||||||||||| ||| ||||||||||||||    
T  37636017 caagattcttaatcaaactatctggccacactttggatccctagtatcatagtctggttaaccaatac 37635950  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 51590193 - 51590226
Alignment:
Q  31 tgaatctttattgtaattgcatgtagcagaatgt 64  Q
    ||||||||||||||||||||||||| ||||||||    
T  51590193 tgaatctttattgtaattgcatgtaacagaatgt 51590226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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