View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3701_low_8 (Length: 455)

Name: NF3701_low_8
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3701_low_8
NF3701_low_8
[»] chr4 (20 HSPs)
chr4 (11-439)||(5162587-5163015)
chr4 (13-439)||(5184419-5184838)
chr4 (113-210)||(55264632-55264729)
chr4 (46-184)||(53924395-53924530)
chr4 (115-210)||(55264380-55264474)
chr4 (119-176)||(44137405-44137462)
chr4 (52-172)||(54458706-54458826)
chr4 (115-210)||(13302119-13302213)
chr4 (45-160)||(49448188-49448303)
chr4 (115-210)||(55284053-55284148)
chr4 (113-176)||(33614384-33614447)
chr4 (45-96)||(45921830-45921881)
chr4 (79-193)||(54090992-54091106)
chr4 (113-174)||(13119381-13119442)
chr4 (113-192)||(13119191-13119270)
chr4 (113-192)||(39051328-39051406)
chr4 (113-172)||(40942675-40942734)
chr4 (115-173)||(7402978-7403036)
chr4 (115-192)||(13432756-13432832)
chr4 (130-210)||(3465369-3465449)
[»] chr2 (14 HSPs)
chr2 (46-193)||(6511016-6511163)
chr2 (113-188)||(22191386-22191461)
chr2 (113-194)||(17658774-17658855)
chr2 (134-194)||(17672942-17673002)
chr2 (126-189)||(22191527-22191590)
chr2 (45-152)||(32502875-32502982)
chr2 (119-176)||(32013984-32014041)
chr2 (134-194)||(17627870-17627930)
chr2 (113-176)||(33940037-33940100)
chr2 (113-160)||(39760175-39760222)
chr2 (134-204)||(17184764-17184834)
chr2 (141-210)||(35736709-35736778)
chr2 (136-184)||(2451166-2451214)
chr2 (52-184)||(32502985-32503117)
[»] chr5 (13 HSPs)
chr5 (115-192)||(36184738-36184815)
chr5 (113-191)||(31065847-31065925)
chr5 (115-194)||(11275790-11275869)
chr5 (113-192)||(33391514-33391593)
chr5 (126-207)||(20399019-20399100)
chr5 (113-191)||(31050968-31051046)
chr5 (139-184)||(987328-987373)
chr5 (115-176)||(8840022-8840083)
chr5 (115-204)||(31046143-31046231)
chr5 (113-176)||(8285238-8285301)
chr5 (141-184)||(36184524-36184567)
chr5 (130-175)||(27354306-27354351)
chr5 (119-192)||(31066088-31066161)
[»] chr6 (18 HSPs)
chr6 (129-192)||(9530547-9530610)
chr6 (110-192)||(19121854-19121936)
chr6 (113-192)||(21969143-21969222)
chr6 (51-160)||(3889971-3890080)
chr6 (113-190)||(19121985-19122062)
chr6 (123-192)||(21394254-21394323)
chr6 (138-210)||(3889883-3889955)
chr6 (140-192)||(30747944-30747996)
chr6 (113-192)||(3960852-3960931)
chr6 (115-190)||(8446945-8447020)
chr6 (115-190)||(8455749-8455824)
chr6 (117-175)||(17333311-17333368)
chr6 (113-159)||(17437558-17437604)
chr6 (45-95)||(17437695-17437745)
chr6 (54-96)||(23765853-23765895)
chr6 (145-190)||(21969306-21969351)
chr6 (135-172)||(24794190-24794227)
chr6 (63-155)||(15965646-15965738)
[»] chr3 (18 HSPs)
chr3 (113-192)||(55447182-55447261)
chr3 (113-192)||(39840659-39840738)
chr3 (113-210)||(38181332-38181429)
chr3 (63-193)||(33075219-33075349)
chr3 (136-193)||(27812204-27812261)
chr3 (115-192)||(20124246-20124322)
chr3 (45-176)||(29504832-29504963)
chr3 (113-184)||(45965804-45965875)
chr3 (113-176)||(46164085-46164148)
chr3 (113-191)||(40472831-40472909)
chr3 (129-191)||(40860967-40861029)
chr3 (119-176)||(31300371-31300428)
chr3 (113-190)||(39840892-39840969)
chr3 (115-192)||(42045771-42045848)
chr3 (120-176)||(1431476-1431532)
chr3 (136-176)||(3910247-3910287)
chr3 (134-174)||(48338573-48338613)
chr3 (136-192)||(49782221-49782277)
[»] chr1 (21 HSPs)
chr1 (119-192)||(28504711-28504784)
chr1 (116-210)||(46410826-46410920)
chr1 (113-193)||(10595501-10595581)
chr1 (45-192)||(6219625-6219772)
chr1 (113-184)||(7790411-7790481)
chr1 (141-192)||(8792967-8793018)
chr1 (135-210)||(10377568-10377643)
chr1 (129-210)||(6219766-6219847)
chr1 (136-189)||(27293283-27293336)
chr1 (113-190)||(27562671-27562748)
chr1 (118-190)||(38576576-38576648)
chr1 (113-207)||(23399510-23399607)
chr1 (126-176)||(15395209-15395259)
chr1 (113-190)||(38783894-38783971)
chr1 (113-161)||(34835619-34835667)
chr1 (141-207)||(40650039-40650104)
chr1 (113-174)||(4066923-4066984)
chr1 (127-204)||(27293426-27293503)
chr1 (135-172)||(34835740-34835777)
chr1 (52-96)||(27293350-27293394)
chr1 (115-155)||(46410682-46410722)
[»] scaffold0022 (1 HSPs)
scaffold0022 (119-176)||(122547-122604)
[»] chr8 (11 HSPs)
chr8 (113-210)||(10028633-10028730)
chr8 (113-194)||(10028741-10028822)
chr8 (46-190)||(33229497-33229635)
chr8 (115-192)||(21136587-21136664)
chr8 (115-192)||(10028876-10028953)
chr8 (114-195)||(23961644-23961725)
chr8 (136-188)||(41687849-41687901)
chr8 (134-193)||(5840352-5840411)
chr8 (126-176)||(23768775-23768825)
chr8 (52-93)||(10028813-10028854)
chr8 (45-93)||(5846951-5846999)
[»] chr7 (14 HSPs)
chr7 (136-190)||(36478557-36478611)
chr7 (115-174)||(21248998-21249057)
chr7 (113-184)||(41008922-41008993)
chr7 (113-192)||(42709917-42709996)
chr7 (46-190)||(10524976-10525114)
chr7 (45-190)||(30935271-30935416)
chr7 (113-173)||(6026-6086)
chr7 (120-207)||(3248445-3248532)
chr7 (113-176)||(3248336-3248399)
chr7 (115-182)||(26752017-26752084)
chr7 (65-155)||(12427916-12428006)
chr7 (135-192)||(12427833-12427890)
chr7 (113-190)||(16830294-16830371)
chr7 (120-176)||(32047272-32047328)
[»] scaffold0528 (1 HSPs)
scaffold0528 (113-191)||(1895-1973)
[»] scaffold0154 (1 HSPs)
scaffold0154 (113-176)||(6220-6283)
[»] scaffold0137 (1 HSPs)
scaffold0137 (113-176)||(17116-17179)


Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 5163015 - 5162587
Alignment:
Q  11 catagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5163015 catagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggt 5162916  T
Q  111 ttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5162915 ttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgacccgatttggtggtt 5162816  T
Q  211 gaagaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162815 gaagaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcga 5162716  T
Q  311 cagagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcatcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162715 cagagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcatcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctg 5162616  T
Q  411 cagggtcaatggctgcagaacgtcatttg 439  Q
    | |||||||||||||||||||||||||||    
T  5162615 ccgggtcaatggctgcagaacgtcatttg 5162587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 5184838 - 5184419
Alignment:
Q  13 tagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggttt 112  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||  |||| ||||||||||||||||||||||||| | || |||||     
T  5184838 tagggtctcataatgaattacttacaaaagcacttagtcaaaagtttgtcaattagaaccttttctttatgtttttgtcacatgtcgaaggatctggttc 5184739  T
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggttga 212  Q
    |||||||||||| ||| | |  || ||||||||||||||||||||||||| || |||||||||  || ||||    |||||| |||||||||||| ||||    
T  5184738 agaaacttttgataaaaaaaatgaataatttgaaatattaatagagttagtgattaatttgag--tggctta----gacatggaccgatttggtgcttga 5184645  T
Q  213 agaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcgaca 312  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184644 agaatta-ttattgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcgaca 5184546  T
Q  313 gagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcatcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctgca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5184545 gagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcgtcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctgcc 5184446  T
Q  413 gggtcaatggctgcagaacgtcatttg 439  Q
    |||||||||||||||||||||||||||    
T  5184445 gggtcaatggctgcagaacgtcatttg 5184419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 55264632 - 55264729
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||| | |||||||||||||||| | |||| |||||||||| ||| | |||||||||    
T  55264632 agaaacttttgacaaagacacagactcttttgaaatattaatagattcagagactaatttgagagtcacttgtaaagacatggaccaaattggtggtt 55264729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 53924530 - 53924395
Alignment:
Q  46 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 145  Q
    ||||| |||||||| | |||||| || ||||||||||||||||||||||||  |||||| ||  || |||||||||||| |||||||  ||||| ||||     
T  53924530 tttgtcaaaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaagacaatgactagtttg- 53924432  T
Q  146 aatattaatagagttagagactaatttgagattgactta 184  Q
      |||||||||||| | | |||||||||||  |||||||    
T  53924431 --tattaatagagtcacatactaatttgagggtgactta 53924395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 55264474 - 55264380
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||| |||||||  ||||| ||||||||||||||||||| || |||||| |||| | ||||||||||||||| | ||| |||||||||||    
T  55264474 aaacttttgacaaagacaatgactattttgaaatattaatagagtcagtgactaaattgaaagtgacttataaagacacg-accaatttggtggtt 55264380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 44137462 - 44137405
Alignment:
Q  119 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  44137462 ttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgaga 44137405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 54458706 - 54458826
Alignment:
Q  52 aaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatatt 151  Q
    |||||||| | |||||| |||||||||| |||||||||||||||  ||||| |  |  |  ||| |||||||| ||||||||| | || |||||||||||    
T  54458706 aaaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagggacctaatcgagacacttttgacaaagacagatattagtttgaaatatt 54458805  T
Q  152 aatagagttagagactaattt 172  Q
    ||||||||| |||| ||||||    
T  54458806 aatagagtttgagattaattt 54458826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 13302213 - 13302119
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||| |||||||||||||| |||||||| ||||||||   || ||||||||||||| ||||||| ||||||| | | | |||||||||||    
T  13302213 aaacttttgaaaaagacagagacta-tttgaaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtt 13302119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 49448188 - 49448303
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 144  Q
    |||||| |||||||| | |||||| ||  ||||||||||||||||||| ||| ||||  || |  || | |||||||||| ||||||| |||||| ||||    
T  49448188 ctttgtcaaaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaagacaaagactagtttg 49448287  T
Q  145 aaatattaatagagtt 160  Q
    ||||||||||| ||||    
T  49448288 aaatattaatatagtt 49448303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 55284053 - 55284148
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||  ||||||||| ||||  |||||||||||||||| |||||||||||||| | | ||||||||||| ||||  ||  |||||||||||    
T  55284053 aaacttttggcaaagacagaaactagattgaaatattaatagaattagagactaatttaataatgacttataaaaacatagactaatttggtggtt 55284148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 33614384 - 33614447
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||||  |||||||||||||| ||||||||||||||| ||| |  |||||||||||||    
T  33614384 agaaacttttgtcaaagacagagactagtttgaaatattaataaagtcatggactaatttgaga 33614447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 45921881 - 45921830
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatg 96  Q
    |||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  45921881 ctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgtcacatg 45921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 54090992 - 54091106
Alignment:
Q  79 ttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagatt 178  Q
    |||||||||||||||||| ||||| |  |  || ||||||||| || ||||||| | |||| ||| |||||||||| |||| |  ||||||||||||| |    
T  54090992 ttatgtttttgtcacatgacgagggacctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaat 54091091  T
Q  179 gacttataaagacat 193  Q
    |||||| || |||||    
T  54091092 gacttacaacgacat 54091106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 13119381 - 13119442
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttga 174  Q
    |||||||||| | |||||||| ||||| ||||||||||||||||||| | | ||||||||||    
T  13119381 agaaacttttaacaaagacagggactattttgaaatattaatagagtcataaactaatttga 13119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 13119270 - 13119191
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| |||||||| ||||| |||||||||||||  | || |   |||||||||||||| ||||| |||||||    
T  13119270 agaaacttttgacaaagacagcgactattttgaaatattaaatgcgtgaagaactaatttgagattcacttacaaagaca 13119191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 39051328 - 39051406
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| |||||||| ||||| ||| ||||||||||||||| | | |||||||| | | ||| |||||||||||    
T  39051328 agaaacttttgacaaagacagtgactattttaaaatattaatagagtcata-actaatttaaaagtgatttataaagaca 39051406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 40942675 - 40942734
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaattt 172  Q
    |||||||||||| ||| ||| |||||||||| ||||||||||| ||| | ||||||||||    
T  40942675 agaaacttttgacaaaaacaaagactaatttaaaatattaatatagtcatagactaattt 40942734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 7403036 - 7402978
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttg 173  Q
    |||| ||||| ||||| |||||||||||| |||||||||||||||  || |||||||||    
T  7403036 aaacatttgataaagaaagagactaatttaaaatattaatagagtcggaaactaatttg 7402978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 13432756 - 13432832
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||| |||| ||||||||| ||| |||| ||||||||   | |||||||||||||| ||||||| |||||||    
T  13432756 aaacttttgacaaagtcagagacta-tttaaaatgttaatagaagcatagactaatttgagaatgacttacaaagaca 13432832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 3465449 - 3465369
Alignment:
Q  130 acagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||||||| ||||||||||| ||| | | |||||||| ||| ||| ||| ||||| ||||||  ||||| |||||    
T  3465449 acagagactaatttaaaatattaataaagtcatatactaatttaagaatgaattacaaagatatgaacgaatttgatggtt 3465369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 6511163 - 6511016
Alignment:
Q  46 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 145  Q
    ||||| |||||||| | |||| ||||| |||||||||||||||||||||||  || |||| |  || ||||| |||||| |||||  ||||||| |||||    
T  6511163 tttgtcaaaagtttctcaatttggtccatgtctttatgtttttgtcacatgatgaagaatctatttgagaaatttttgacaaagatggagactattttga 6511064  T
Q  146 aatattaatagagttagagactaatttgagattgacttataaagacat 193  Q
    |||||||| ||| | | |||||||||||| | ||||||||||||||||    
T  6511063 aatattaacagaatcatagactaatttgaaaatgacttataaagacat 6511016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 22191461 - 22191386
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaa 188  Q
    |||||||||||| ||||||| |||||| ||| ||||||||||  ||||| |||||||||||| | |||||||||||    
T  22191461 agaaacttttgacaaagacaaagactattttaaaatattaattaagttatagactaatttgaaaatgacttataaa 22191386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 17658855 - 17658774
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 194  Q
    ||||| |||||| |||||||  ||||| |||||||||||||||||||| | ||||||||||| | ||||||| ||| |||||    
T  17658855 agaaatttttgacaaagacaatgactattttgaaatattaatagagttggggactaatttgatagtgacttaaaaatacatg 17658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 17673002 - 17672942
Alignment:
Q  134 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 194  Q
    |||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||| |||||    
T  17673002 agactattttgaaatattaatagaattggagactaatttgagagtgacttaaaaatacatg 17672942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 22191527 - 22191590
Alignment:
Q  126 aaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaag 189  Q
    ||||||| |||||| ||| ||||||||||||||| || ||||||||||||| ||||||| ||||    
T  22191527 aaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaag 22191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 32502875 - 32502982
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 144  Q
    |||||||||| |||| | |||||| || |||||| ||||||||||||||||| ||||  || |  || | ||| |||||| ||||||| |||||| ||||    
T  32502875 ctttgttaaatgtttctcaattagatcattgtctctatgtttttgtcacatgacgagacatttaattgaaaaaattttgacaaagacaaagactattttg 32502974  T
Q  145 aaatatta 152  Q
    ||||||||    
T  32502975 aaatatta 32502982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 32013984 - 32014041
Alignment:
Q  119 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| |||||||| ||||| |||||||||| |||||||| | ||||||||||||||    
T  32013984 ttttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgaga 32014041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 17627930 - 17627870
Alignment:
Q  134 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 194  Q
    |||||| |||||||||||||||||||| | ||||||||||| | ||||||| ||| |||||    
T  17627930 agactattttgaaatattaatagagttggtgactaatttgaaagtgacttaaaaatacatg 17627870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 33940037 - 33940100
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||||| ||| |||| ||||| ||||||||||||||| ||| |  |||||||||||||    
T  33940037 agaaacttttgaaaaaaacagtgactattttgaaatattaataaagtcaacgactaatttgaga 33940100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 39760222 - 39760175
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagtt 160  Q
    |||||||||||| ||| ||| |||||| ||||||||||||||||||||    
T  39760222 agaaacttttgataaaaacatagactattttgaaatattaatagagtt 39760175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 17184834 - 17184764
Alignment:
Q  134 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttg 204  Q
    |||||| ||| ||||||||||||||| |||||||| ||||| | |  |||| ||||||||||||| |||||    
T  17184834 agactagtttaaaatattaatagagtcagagactagtttgataatagcttacaaagacatgaaccaatttg 17184764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 35736778 - 35736709
Alignment:
Q  141 tttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    ||||| |||||| |||||| || ||||| ||||||| ||| ||| ||||||||| ||| |||||||||||    
T  35736778 tttgagatattagtagagtcagtgactagtttgagagtgaattacaaagacatggaccaatttggtggtt 35736709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 2451166 - 2451214
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgagattgactta 184  Q
    ||||||||  ||| |||||||||||| |||||||||||||| |||||||    
T  2451166 actaatttataatgttaatagagttaaagactaatttgagaatgactta 2451214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 32502985 - 32503117
Alignment:
Q  52 aaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatatt 151  Q
    |||||||| | |||||| ||  ||||| ||||||||| ||| ||| ||||| |  |  || |||| ||||||| |||||||  ||||| ||| ||||||     
T  32502985 aaaagtttatcaattagatctctgtctctatgtttttatcatatgacgagggacttaattgagaatcttttgacaaagacaatgactattttaaaatatc 32503084  T
Q  152 aatagagttagagactaatttgagattgactta 184  Q
    ||||||||  ||||||||||||| | |||||||    
T  32503085 aatagagtgtgagactaatttgataatgactta 32503117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 36184738 - 36184815
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||| |||||||    
T  36184738 aaacttttgacaaagacagtgactattttgaaatactaatagagttagagactaatttgagagtgatttacaaagaca 36184815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 31065925 - 31065847
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 191  Q
    |||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||||    
T  31065925 agaaacttttgacaaagacaatgactattttgaaatattaatagagttagagactaatcagtgattcacttataaagac 31065847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 11275790 - 11275869
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 194  Q
    |||||||||| ||| | ||| |||||||| ||||||||||| ||| |||||||||||||||| ||| ||| |||||||||    
T  11275790 aaacttttgacaaatatagaaactaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaagacatg 11275869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 33391514 - 33391593
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||  || ||||||||||||| | ||||||| |||||||    
T  33391514 agaaacttttgataaagatagggactaatttgaaatactaatagtttttgagactaatttgataatgacttacaaagaca 33391593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 20399019 - 20399100
Alignment:
Q  126 aaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtg 207  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||||||| || |||| ||||| | | ||| ||||||||    
T  20399019 aaagacaaggactaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagatagggaccaatttggtg 20399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 31051046 - 31050968
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 191  Q
    |||||||||||| ||||||   ||||| |||||||||||| |||||| ||||||||||| | || | ||||||||||||    
T  31051046 agaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaattagtgaatcacttataaagac 31050968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 987328 - 987373
Alignment:
Q  139 aatttgaaatattaatagagttagagactaatttgagattgactta 184  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  987328 aatttaaaatattaatagagttatagactaatttgagagtgactta 987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 8840022 - 8840083
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||  | ||||||| |||||    
T  8840022 aaacttttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgaga 8840083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 31046143 - 31046231
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttg 204  Q
    |||||||||| |||| || |||||| ||| |||||||||||||||  |||  |||||||||| | ||||| ||||||||| |||||||||    
T  31046143 aaacttttgacaaaggcatagactattttaaaatattaatagagtcggaggataatttgagaatcacttacaaagacatg-accgatttg 31046231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 8285238 - 8285301
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||||| ||||| | |||||| ||| ||||||||||| ||| || |||||||||||||    
T  8285238 agaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgaga 8285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 36184567 - 36184524
Alignment:
Q  141 tttgaaatattaatagagttagagactaatttgagattgactta 184  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||    
T  36184567 tttgaaatattaataaagttatagactaatttgagagtgactta 36184524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 27354351 - 27354306
Alignment:
Q  130 acagagactaatttgaaatattaatagagttagagactaatttgag 175  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||||||    
T  27354351 acagagactattttaaaatattaatatagttagggactaatttgag 27354306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 31066088 - 31066161
Alignment:
Q  119 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||| |||||||||||||| ||| |||||||||||||||  | | ||||||| ||| | ||||| |||||||    
T  31066088 ttttgataaagacagagactattttaaaatattaatagagtcgggggctaatttaagaatcacttacaaagaca 31066161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 9530610 - 9530547
Alignment:
Q  129 gacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  9530610 gacagagactagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagaca 9530547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 19121936 - 19121854
Alignment:
Q  110 tttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    ||||||| ||||||| ||||| ||| |||| ||| |||||||||||||||||| ||||| ||||||| || |||| |||||||    
T  19121936 tttagaagcttttgacaaagatagaaactagtttaaaatattaatagagttagcgactagtttgagagtggcttacaaagaca 19121854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 21969222 - 21969143
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| ||||||||||  || ||| ||||||||||||||| || ||||| ||||| | | |||||||||||||    
T  21969222 agaaacttttgataaagacagagtttattttaaaatattaatagagtcagtgactattttgaaaatcacttataaagaca 21969143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 3889971 - 3890080
Alignment:
Q  51 taaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatat 150  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||   ||||| |  |  || |||||||||||| |||||||   |||| |||  |||||    
T  3889971 taaaagtttctcaattaggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaagacatgaactagtttagaatat 3890070  T
Q  151 taatagagtt 160  Q
    ||||||||||    
T  3890071 taatagagtt 3890080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 19121985 - 19122062
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||| | | ||||||| | |||| ||||||||||||||||||| | |||||||||||| | ||||||| |||||    
T  19121985 agaaacttctaacaaagacataaactagtttgaaatattaatagagtcatagactaatttgaaagtgacttacaaaga 19122062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 21394323 - 21394254
Alignment:
Q  123 gagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||| ||| |||||||| ||| |||||||||||||||||  ||||||||||||| || |||| |||||||    
T  21394323 gagagagagagagactattttaaaatattaatagagttaatgactaatttgagagtggcttacaaagaca 21394254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 3889955 - 3889883
Alignment:
Q  138 taatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    ||||||||||| ||||||||||    ||||||||||||| ||| ||| ||||||||||||  |||||||||||    
T  3889955 taatttgaaatcttaatagagtggttgactaatttgagaatgaattacaaagacatgaactaatttggtggtt 3889883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 30747996 - 30747944
Alignment:
Q  140 atttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||| |||||| |||||||||||||| |||||||||| ||||||| |||||||    
T  30747996 atttaaaatatcaatagagttagagattaatttgagagtgacttagaaagaca 30747944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 3960852 - 3960931
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| ||| |||  ||||||||| ||||||||||||||| | |||||| ||||| | | ||||| |||||||    
T  3960852 agaaacttttgacaaacacaaggactaatttaaaatattaatagagtcatagactagtttgataataacttacaaagaca 3960931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 8447020 - 8446945
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||| | |||||||  ||||| ||||||||||||||||| | || ||||||||||| | | |||||||||||    
T  8447020 aaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaaga 8446945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 8455824 - 8455749
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||| | |||||||  ||||| ||||||||||||||||| | || ||||||||||| | | |||||||||||    
T  8455824 aaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaaga 8455749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 17333368 - 17333311
Alignment:
Q  117 acttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgag 175  Q
    |||||||| |||||| ||| ||| ||||||||||||||||||| || ||||||||||||    
T  17333368 acttttgacaaagac-gaggctagtttgaaatattaatagagtcagggactaatttgag 17333311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 17437604 - 17437558
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagt 159  Q
    |||||||||||| ||||||| ||||||| |||| |||||||||||||    
T  17437604 agaaacttttgataaagacaaagactaaattgatatattaatagagt 17437558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 17437745 - 17437695
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacat 95  Q
    ||||||||||||||| | |||||| || |||||| ||||||||||||||||    
T  17437745 ctttgttaaaagtttctcaattagatctttgtctctatgtttttgtcacat 17437695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 23765853 - 23765895
Alignment:
Q  54 aagtttgttaattaggtccttgtctttatgtttttgtcacatg 96  Q
    |||||| | ||||||||| ||||||||||||||||||||||||    
T  23765853 aagtttttcaattaggtcattgtctttatgtttttgtcacatg 23765895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 21969306 - 21969351
Alignment:
Q  145 aaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||||| |||| |||||||||||||||||| ||||| |||||    
T  21969306 aaatattaattgagtcagagactaatttgagattcacttacaaaga 21969351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 24794190 - 24794227
Alignment:
Q  135 gactaatttgaaatattaatagagttagagactaattt 172  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  24794190 gactaatttgaaacattaataaagttagagactaattt 24794227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 15965738 - 15965646
Alignment:
Q  63 aattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaata 155  Q
    |||||||| | ||||||||||||||||||||||| ||| | | ||  || | |||||||||| || || | |||||| ||| |||||||||||    
T  15965738 aattaggttcatgtctttatgtttttgtcacatgacgaaggacgtaattgaaaaacttttgacaaggatatagactagtttaaaatattaata 15965646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 55447182 - 55447261
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||| |||||||| | ||||| |||||||    
T  55447182 agaaacttttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttacaaagaca 55447261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 39840738 - 39840659
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| ||| |||  ||||| ||||||||||||||||||| |||||||||||||||| | ||||| |||||||    
T  39840738 agaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagaca 39840659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 38181429 - 38181332
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||||| |||||  ||||||| |||||||||||||||||||  | ||  ||||||||| |  |||||||||||||||||| |||| ||||||    
T  38181429 agaaacttttgataaagatggagactagtttgaaatattaatagagtccgtgataaatttgagagtagcttataaagacatgaaccaatttagtggtt 38181332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 33075219 - 33075349
Alignment:
Q  63 aattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaatagagttag 162  Q
    ||||||||| |||||||||| |||||||||  || ||||  || |  || | ||| |||||| ||| |||  ||||||||| ||||||||||||| |||     
T  33075219 aattaggtcattgtctttatatttttgtcatgtgacgagagatataattgataaatttttgacaaaaacaatgactaatttaaaatattaatagatttaa 33075318  T
Q  163 agactaatttgagattgacttataaagacat 193  Q
     || |||||||||| ||||||||||||||||    
T  33075319 tgattaatttgagagtgacttataaagacat 33075349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 27812261 - 27812204
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgagattgacttataaagacat 193  Q
    |||||||||||||||||||||| | |||||||||||| ||| ||||||| ||||||||    
T  27812261 actaatttgaaatattaatagactcagagactaatttaagaatgacttacaaagacat 27812204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 20124246 - 20124322
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||| ||| |||  ||||| ||||||||||| ||||||| |||||||||||||| | ||||||| |||||||    
T  20124246 aaacttttgacaaaaacaatgactattttgaaatattgatagagtcagagactaatttga-aatgacttacaaagaca 20124322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 29504832 - 29504963
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 144  Q
    |||| |||||||||| | |||||||||  |||||||||| |||||||||||| ||||| |     |  |||||||||| | ||||| | | |||| |||     
T  29504832 ctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagataaaaactagttta 29504931  T
Q  145 aaatattaatagagttagagactaatttgaga 176  Q
    ||||||||||||||||   |||||||||||||    
T  29504932 aaatattaatagagttgaggactaatttgaga 29504963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 45965804 - 45965875
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgactta 184  Q
    |||||||||||| ||||| |   |||| ||||||||||||||||||| | | |||||||||||| |||||||    
T  45965804 agaaacttttgaaaaagataataactagtttgaaatattaatagagtcacaaactaatttgagagtgactta 45965875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 46164085 - 46164148
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| ||||| |||||||||||| | |||||  |||||||||||| || |||||||||||||    
T  46164085 agaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgaga 46164148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 40472909 - 40472831
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 191  Q
    |||||||||||| ||||| | | |||| ||| |||| |||||||||| | |||||||||||||| | ||||| ||||||    
T  40472909 agaaacttttgacaaagaaataaactagtttaaaattttaatagagtcaaagactaatttgagagtaacttacaaagac 40472831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 40860967 - 40861029
Alignment:
Q  129 gacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 191  Q
    |||| |||||||||||||||||||||| | | ||||||||| || ||| ||||||| ||||||    
T  40860967 gacaaagactaatttgaaatattaataaaatcagagactaaattaagaatgacttacaaagac 40861029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 31300371 - 31300428
Alignment:
Q  119 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| ||||||| | | |||||| |||||| |||||||||| ||||||||||||||    
T  31300371 ttttgacaaagacaaaaattaatttaaaatataaatagagttatagactaatttgaga 31300428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 39840892 - 39840969
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    ||||| |||| | ||||| || ||||| ||||||||||||||| ||||||  |||||||||||| | ||||| |||||    
T  39840892 agaaaattttaacaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaaga 39840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 42045848 - 42045771
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||| | |||||  ||||| |||||||||||||||||||||  || |||||||||  | ||||| |||||||    
T  42045848 aaacttttgacatagacaatgactattttgaaatattaatagagttatggattaatttgaggatcacttacaaagaca 42045771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 1431476 - 1431532
Alignment:
Q  120 tttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    ||||| |||||||| ||||||||||| ||||||||||| ||   |||||||||||||    
T  1431476 tttgacaaagacagtgactaatttgagatattaatagaattgaggactaatttgaga 1431532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 3910287 - 3910247
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  3910287 actagtttaaaatattaatagagttagggactaatttgaga 3910247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 48338573 - 48338613
Alignment:
Q  134 agactaatttgaaatattaatagagttagagactaatttga 174  Q
    |||||| ||||| ||||||||||||| ||||||||||||||    
T  48338573 agactattttgatatattaatagagtcagagactaatttga 48338613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 49782221 - 49782277
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||| |||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  49782221 actattttgaaatattaatagagttatggactaatttgaaaaacacttataaagaca 49782277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 28504784 - 28504711
Alignment:
Q  119 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||| ||| |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||| |||||||    
T  28504784 ttttgacaaaaacagagactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagaca 28504711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 46410826 - 46410920
Alignment:
Q  116 aacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    ||||||||| |||||||||||||| |||||||||||| |||||| | ||||||| |||||| | ||||| |||||||   ||| |||||||||||    
T  46410826 aacttttgataaagacagagactattttgaaatattattagagtcatagactaaattgagaatcacttacaaagacaatgaccaatttggtggtt 46410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 10595501 - 10595581
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacat 193  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||  || |||||||| | || |||| ||||||||    
T  10595501 agaaacttttgacaaagacaatgactaatttgaaatattaatagagttatggattaatttgacaatgtcttacaaagacat 10595581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 6219772 - 6219625
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 144  Q
    |||||| |||||| | | |||||||||   |||||||||||||||||||||   |||| |  |  || ||||| |||||| |||||||| |||||||||     
T  6219772 ctttgtcaaaagtatctcaattaggtcaccgtctttatgtttttgtcacataatgagggacctaattgagaaatttttgacaaagacagtgactaattta 6219673  T
Q  145 aaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    ||||||||||| | | | |||||| ||| ||| |||||||||||||||    
T  6219672 aaatattaataaaatcatagactagtttaagaatgacttataaagaca 6219625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 7790411 - 7790481
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgactta 184  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||| | | |||||||||||| |||||||    
T  7790411 agaaacttttgataaagatagaaactaatttgaaatattaatagagtcata-actaatttgagaatgactta 7790481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 8793018 - 8792967
Alignment:
Q  141 tttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  8793018 tttgaaatattaatagagttggagactaatttgagagtgacttacaaagaca 8792967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 10377568 - 10377643
Alignment:
Q  135 gactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    ||||||||||||||||||||||||| | |||||||||||| | ||||||| ||||||| | ||| | |||||||||    
T  10377568 gactaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaagacagggaccaacttggtggtt 10377643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 6219766 - 6219847
Alignment:
Q  129 gacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||| |||||| ||| ||||||||||||||||||||||  |||||||| || |||| ||||||||||| | |||| ||||||    
T  6219766 gacaaagactagtttaaaatattaatagagttagagacagatttgagaatggcttacaaagacatgaagcaatttagtggtt 6219847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 27293336 - 27293283
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgagattgacttataaag 189  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||    
T  27293336 actaatttgaaatattaatagagtcagagactaatttgagaatgatttacaaag 27293283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 27562748 - 27562671
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||||  | |||||| |||| |||| || |||||    
T  27562748 agaaacttttgacaaagacagaaattaatttgaaatattaatagagttatggtctaattcgagaatgacatacaaaga 27562671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 38576648 - 38576576
Alignment:
Q  118 cttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    ||||||| |||||||||||||  ||||||||||||||||| | | |||||||||||||| ||| ||| |||||    
T  38576648 cttttgataaagacagagactggtttgaaatattaatagaatcaaagactaatttgagaatgatttacaaaga 38576576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 23399607 - 23399510
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaata---ttaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtg 207  Q
    |||||||||||| ||| |||  |||||||||||||||   ||||||||||||  ||||||||||| ||| ||||| ||||||||| ||| | ||||||    
T  23399607 agaaacttttgacaaaaacaatgactaatttgaaatagtattaatagagttaaggactaatttgatattaacttagaaagacatgcaccaaattggtg 23399510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 15395259 - 15395209
Alignment:
Q  126 aaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||||||||||    
T  15395259 aaagacagagactattttaaaatattaatagagtcatagactaatttgaga 15395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 38783971 - 38783894
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||||||| |||||||  ||||| ||| ||||||||||||||| |  ||||||||||| | ||||||| |||||    
T  38783971 agaaacttttgacaaagacaatgactattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaaga 38783894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 34835667 - 34835619
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagtta 161  Q
    |||||||||||| |||||||||||||| ||||||||||| ||| |||||    
T  34835667 agaaacttttgacaaagacagagactagtttgaaatattgataaagtta 34835619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 40650039 - 40650104
Alignment:
Q  141 tttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtg 207  Q
    |||||||||||||| ||||||| ||||||||||||| | ||||| ||||||||| ||| | ||||||    
T  40650039 tttgaaatattaatggagttag-gactaatttgagaatcacttacaaagacatggaccaaattggtg 40650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 4066984 - 4066923
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttga 174  Q
    |||||||||||| |||||||| ||| | |||||| |||||||||||| || ||| |||||||    
T  4066984 agaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 27293426 - 27293503
Alignment:
Q  127 aagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttg 204  Q
    ||||||| | ||| ||||||||||||||| ||| | |||||||||| ||| ||||||| ||||| || |||| |||||    
T  27293426 aagacaggggctagtttgaaatattaataaagtcatagactaatttaagaatgacttacaaagatataaaccaatttg 27293503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 34835740 - 34835777
Alignment:
Q  135 gactaatttgaaatattaatagagttagagactaattt 172  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  34835740 gactaatttaaaatattaatagagttagaaactaattt 34835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 27293350 - 27293394
Alignment:
Q  52 aaaagtttgttaattaggtccttgtctttatgtttttgtcacatg 96  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||    
T  27293350 aaaagtttctcaattaggtctttgtctttatgtttttgtaacatg 27293394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 46410722 - 46410682
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaata 155  Q
    |||||||||| |||||| ||||||| |||||||||||||||    
T  46410722 aaacttttgacaaagactgagactattttgaaatattaata 46410682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 122547 - 122604
Alignment:
Q  119 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  122547 ttttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgaga 122604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 10028730 - 10028633
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 210  Q
    |||||||||||  || || | |||||||||||||||||||||||||| || ||||||||||||| ||||||| ||| ||||  | | |||||||||||    
T  10028730 agaaacttttggcaaggataaagactaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttggtggtt 10028633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 10028822 - 10028741
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 194  Q
    |||||||||||  ||||| ||||||| ||||||||||||||||||||  | ||||||||||||| ||||||| ||| |||||    
T  10028822 agaaacttttggcaaagatagagactgatttgaaatattaatagagtcggtgactaatttgagaatgacttacaaatacatg 10028741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 33229635 - 33229497
Alignment:
Q  46 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 145  Q
    ||||| |||||||| | |||||| ||| ||||||||||||||||||||||| ||||| |  |  || ||||||||||      |||| |||||| |||||    
T  33229635 tttgtcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattgagaaactttt------gacaaagactagtttga 33229542  T
Q  146 aatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    ||||||||||| ||| | |||||||||||||  |||||| |||||    
T  33229541 aatattaatagggttggggactaatttgagagcgacttacaaaga 33229497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 21136664 - 21136587
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||| ||||| |  ||||| ||||||||||||||||||| | |||||||||||||| ||||||  |||||||    
T  21136664 aaacttttgacaaagataaggactattttgaaatattaatagagtcaaagactaatttgagaatgactttaaaagaca 21136587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 10028876 - 10028953
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||| ||||| |||||||  ||||| ||||||||||||||| ||| | |||||||||||||| |||| || |||||||    
T  10028876 aaacctttgaaaaagacaacgactagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaagaca 10028953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 23961644 - 23961725
Alignment:
Q  114 gaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatga 195  Q
    ||||||||||| ||||  || ||||| |||||||||||||| || | ||||||| |||||| | ||||||| ||||||||||    
T  23961644 gaaacttttgataaagttagggactattttgaaatattaattgaatcagagactgatttgaaaatgacttacaaagacatga 23961725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 41687849 - 41687901
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgagattgacttataaa 188  Q
    |||| ||||||||||||||||||| | | |||||||||||| |||||||||||    
T  41687849 actagtttgaaatattaatagagtcacaaactaatttgagagtgacttataaa 41687901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 5840411 - 5840352
Alignment:
Q  134 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacat 193  Q
    |||||| ||| ||||||||||||| | |||||||||||||||| | ||||| ||||||||    
T  5840411 agactattttaaaatattaatagaatcagagactaatttgagagtaacttacaaagacat 5840352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 23768825 - 23768775
Alignment:
Q  126 aaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||||||| ||| ||||||||||| | ||| ||||||||||||||    
T  23768825 aaagacagagactattttaaaatattaataaaattatagactaatttgaga 23768775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 10028813 - 10028854
Alignment:
Q  52 aaaagtttgttaattaggtccttgtctttatgtttttgtcac 93  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  10028813 aaaagtttctcaattaggtccatgtctttatgtttttgtcac 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 5846951 - 5846999
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcac 93  Q
    ||||||| ||||||| | ||||||||| |||||| ||||||||||||||    
T  5846951 ctttgtttaaagtttttcaattaggtcattgtctctatgtttttgtcac 5846999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 36478557 - 36478611
Alignment:
Q  136 actaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||    
T  36478557 actaatttgaaatattgataaagttataaactaatttgagattgacttataaaga 36478611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 21248998 - 21249057
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttga 174  Q
    |||||||||| |||||  ||||||||||| ||||||||||| ||||||| ||||||||||    
T  21248998 aaacttttgacaaagatggagactaatttaaaatattaataaagttagaaactaatttga 21249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 41008922 - 41008993
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgactta 184  Q
    |||||||||| | ||||| |||||||| ||| ||||||||||||||| ||||| |||||||| | |||||||    
T  41008922 agaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgactta 41008993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 42709996 - 42709917
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    |||||||||||| |||||||  ||||| ||| |||||||||||||||  |||||| |||||||| | ||||| |||||||    
T  42709996 agaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagaca 42709917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 10524976 - 10525114
Alignment:
Q  46 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 145  Q
    ||||| |||||||| | |||||| ||| | ||||||||||||||||||||| ||||| |  |  || ||||||||||      |||| |||||| |||||    
T  10524976 tttgtcaaaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattgagaaactttt------gacaaagactagtttga 10525069  T
Q  146 aatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    ||||||||||| ||  | ||| ||||||||| ||||||| |||||    
T  10525070 aatattaatagggtcggggacaaatttgagagtgacttacaaaga 10525114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 30935271 - 30935416
Alignment:
Q  45 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 144  Q
    |||||| |||||||| | | |||| ||||| ||||||||||||||||||||| ||||| |  |  || |     |||||| ||||| || || || ||||    
T  30935271 ctttgtcaaaagtttttcacttagatccttatctttatgtttttgtcacatgacgagggacctaattgaattttttttgacaaagatagggattagtttg 30935370  T
Q  145 aaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    ||||||||||| |||  ||||||||||||||| ||||||| |||||    
T  30935371 aaatattaataaagtcggagactaatttgagagtgacttacaaaga 30935416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 6026 - 6086
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttg 173  Q
    |||||| ||||| ||||||| |||||||||||||||||||| | ||| | |||||||||||    
T  6026 agaaacgtttgataaagacaaagactaatttgaaatattaacaaagtcaaagactaatttg 6086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 3248445 - 3248532
Alignment:
Q  120 tttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga-ttgacttataaagacatgaaccgatttggtg 207  Q
    ||||| |||||||||||||| ||||| ||||||||| ||| | |||||||||| ||| |||| ||||||||||| | ||| ||||||||    
T  3248445 tttgacaaagacagagactattttgacatattaatatagtcaaagactaatttaagagttga-ttataaagacagggaccaatttggtg 3248532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 3248399 - 3248336
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| ||||| ||||||||| |||| ||||| ||||||||| ||| ||| ||||||||||||    
T  3248399 agaaacatttgacaaagacagaaactattttgagatattaataaagtcagatactaatttgaga 3248336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 26752017 - 26752084
Alignment:
Q  115 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgact 182  Q
    |||||||||| ||||||| |||||| ||| ||||| ||| | ||| |||||||||||||||| |||||    
T  26752017 aaacttttgacaaagacaaagactattttaaaataataacaaagtcagagactaatttgagagtgact 26752084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 12427916 - 12428006
Alignment:
Q  65 ttaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaata 155  Q
    ||||||| |||||||||||||||||||||||| ||||  |     || | |||||||||| |||||||  ||||| |||||||||||||||    
T  12427916 ttaggtcattgtctttatgtttttgtcacatgacgagagaccaaattgaaaaacttttgacaaagacatggactagtttgaaatattaata 12428006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 12427890 - 12427833
Alignment:
Q  135 gactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 192  Q
    ||||||||| ||||||||||||||| |   |||||||||||| ||||||| |||||||    
T  12427890 gactaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaagaca 12427833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 16830371 - 16830294
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 190  Q
    |||||||| ||| |||||||   |||| |||| |||||||||||| || || |||||||||||| ||||||| |||||    
T  16830371 agaaacttatgacaaagacatgcactagtttggaatattaatagaatttgacactaatttgagagtgacttacaaaga 16830294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 32047328 - 32047272
Alignment:
Q  120 tttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    ||||| |||||||||||| | |||||  |||||||||||| |||||| |||||||||    
T  32047328 tttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgaga 32047272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 1895 - 1973
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 191  Q
    |||||||||||| ||||||   ||||| |||||||||||| |||||| ||||||||||| | || | ||||||||||||    
T  1895 agaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaattagtgaatcacttataaagac 1973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 6220 - 6283
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||||||| | |||| || | |||| ||||||||||||||||||| | ||||||||||||||    
T  6220 agaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgaga 6283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 17179 - 17116
Alignment:
Q  113 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 176  Q
    |||||| ||||| ||||||||  |||| ||| |||||||||||||||| | |||||||||||||    
T  17179 agaaacgtttgacaaagacaggaactagtttaaaatattaatagagtttgggactaatttgaga 17116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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