View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_low_9 (Length: 437)
Name: NF3701_low_9
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 46811878 - 46812279
Alignment:
| Q |
19 |
cactatgccaaactataacatctctgttttcagcaacagcaaacactacattcactataaaaccgataagattacggattggactcttggtaagggatat |
118 |
Q |
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| T |
46811878 |
cactatgccaaactataacatctctgttttcagcaacagcaaacactacattcactataaaaccgataagattacggattggactcttggtaagggatat |
46811977 |
T |
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| Q |
119 |
atttaaacagaagtgaagagtttgtgtaagtgtaatttttcaacnnnnnnnnnnnnncatatagaagaaagtcgaaagaccattcaaataagatgtcagt |
218 |
Q |
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| T |
46811978 |
atttaaacagaagtgaagagtttgtgtaagtgtaatttttcaacaaaaaaaaaaa--catatagaagaaagtcgaaagaccattcaaataagatgtcagt |
46812075 |
T |
|
| Q |
219 |
agagaaagttcaatgcatgtgttaggtttagggtgcaccttaagatgactaaactgtattttaggaaaagaagagggtgtggtagggtaggggtgtaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46812076 |
agagaaagttcaatgcatgtgttaggtttagggtgcgccttaagatgactaaactgtattttaggaaaagaagagggtgtggtagggtaggggtgtaaaa |
46812175 |
T |
|
| Q |
319 |
taaggttggaagggtgacttcgagtaacagcctaaaggtggtagaaagggggtgtgggaagcaagggaatgaggaaaaacaaaagagaagcaggaaatta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46812176 |
taaggttggaagggtgacttcgagtaacagcctaaaggtggtagaaagggggtgtgggaagcaagggaaggaggaaaaacaaaagagaagcaggaaatta |
46812275 |
T |
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| Q |
419 |
gtga |
422 |
Q |
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|||| |
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| T |
46812276 |
gtga |
46812279 |
T |
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