View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3702_high_2 (Length: 448)

Name: NF3702_high_2
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3702_high_2
NF3702_high_2
[»] chr1 (2 HSPs)
chr1 (16-416)||(9581516-9581916)
chr1 (15-404)||(9587086-9587474)
[»] chr7 (3 HSPs)
chr7 (131-254)||(10615654-10615777)
chr7 (127-256)||(10169040-10169169)
chr7 (127-256)||(10176565-10176694)
[»] chr4 (13 HSPs)
chr4 (127-243)||(1755490-1755606)
chr4 (198-303)||(553767-553872)
chr4 (340-387)||(1524177-1524224)
chr4 (20-82)||(532653-532715)
chr4 (187-236)||(3437630-3437679)
chr4 (186-294)||(661854-661962)
chr4 (349-389)||(2373334-2373374)
chr4 (188-256)||(2547289-2547357)
chr4 (185-237)||(55907684-55907736)
chr4 (269-308)||(1481722-1481761)
chr4 (268-302)||(53760237-53760271)
chr4 (190-239)||(571330-571379)
chr4 (192-244)||(5106558-5106610)
[»] chr6 (8 HSPs)
chr6 (118-245)||(6417020-6417147)
chr6 (185-254)||(7132300-7132369)
chr6 (186-254)||(7135224-7135292)
chr6 (186-254)||(7138147-7138215)
chr6 (185-292)||(8913374-8913481)
chr6 (127-173)||(9412061-9412107)
chr6 (192-245)||(6423907-6423960)
chr6 (15-83)||(9411955-9412023)
[»] chr5 (2 HSPs)
chr5 (269-378)||(32268614-32268723)
chr5 (192-297)||(41900443-41900548)
[»] chr3 (2 HSPs)
chr3 (185-302)||(51763334-51763451)
chr3 (118-254)||(13469641-13469777)
[»] chr2 (1 HSPs)
chr2 (185-237)||(1036620-1036672)
[»] chr8 (3 HSPs)
chr8 (115-301)||(32151893-32152079)
chr8 (187-291)||(14004140-14004244)
chr8 (268-308)||(17642873-17642913)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 9581516 - 9581916
Alignment:
Q  16 agagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcattg 115  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  9581516 agagagattaattttgcggagtctggaaaatgctaatgaaagagtctctaccccatggagaatgctattgcaaccgtcgatacaaaataaagggccattg 9581615  T
Q  116 aggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttg 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  || |||||| |||||||||||||||||||| ||||    
T  9581616 aggtcaagtatttcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattgaaaatacggatgttcgaacaaatgagagatgtcaacgttg 9581715  T
Q  216 taatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaacatgagacttgaga 315  Q
    ||||||||| ||||||||||||||  ||||  ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  9581716 taatctttacggagaaagctcgcagtccatcagcaggaatgtaggattggtgggagagattgagcgatgtgagtttcaatgggaaacaagagacttgata 9581815  T
Q  316 caaaagctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggccatagggaagagggtgtgttgattca 415  Q
    || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||    
T  9581816 cagaagctcgttgaggttacctctgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggcgagagggaagaaggcgtgttgattca 9581915  T
Q  416 c 416  Q
    |    
T  9581916 c 9581916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 404
Target Start/End: Original strand, 9587086 - 9587474
Alignment:
Q  15 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |||||||||| |    
T  9587086 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcact 9587185  T
Q  115 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagtt 214  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||| |||    
T  9587186 taggtcaagtatttcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgtt 9587285  T
Q  215 gtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaacatgagacttgag 314  Q
    ||||||||||||||||||||  ||||||||  ||| |||||| | | ||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  9587286 gtaatctttaaggagaaagcatgcaacccaattgcgggaatgcaggattgactggagagattgagcgatgtgagtttcaatgggaaacaagagacttgag 9587385  T
Q  315 acaaaagctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggccatagggaagagggt 404  Q
    | | |||||||||||||| || | |||| | |||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||    
T  9587386 atagaagctcgttgaggtcacctttgtagc-cgtgaggtcgagggaggtgaggttggtgaatctttgaaagacgcgagagggaagagggt 9587474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 10615654 - 10615777
Alignment:
Q  131 agtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaaggaga 230  Q
    ||||||||||||||||| ||||| |||||||  ||| |||||| ||| | |  ||||| ||||||| ||||||| ||||||||||||||||||  |||||    
T  10615654 agtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggaga 10615753  T
Q  231 aagctcgcaacccatgtgcaggaa 254  Q
    ||||||| ||||||| ||| ||||    
T  10615754 aagctcgtaacccatttgcgggaa 10615777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 10169169 - 10169040
Alignment:
Q  127 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 226  Q
    |||||| ||||| |||||||| || || || ||||||||| || |||  ||||||   |||| ||||||| ||||||| ||||||||| |||| |||       
T  10169169 ttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatattttga 10169070  T
Q  227 gagaaagctcgcaacccatgtgcaggaatg 256  Q
    |||||| |||||||||||| ||| ||||||    
T  10169069 gagaaaactcgcaacccatttgcgggaatg 10169040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 10176694 - 10176565
Alignment:
Q  127 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 226  Q
    |||||| ||||| |||||||| || || || ||||||||| || |||  ||||||   |||| ||||||| ||||||| ||||||||| |||| |||       
T  10176694 ttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatattttga 10176595  T
Q  227 gagaaagctcgcaacccatgtgcaggaatg 256  Q
    |||||| |||||||||||| ||| ||||||    
T  10176594 gagaaaactcgcaacccatttgcgggaatg 10176565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 1755490 - 1755606
Alignment:
Q  127 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 226  Q
    |||||| ||||||||||| || ||||||||||| ||||||||  ||| || || |  ||||||||||||  ||||||| ||||||||||||||||||       
T  1755490 ttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttttga 1755589  T
Q  227 gagaaagctcgcaaccc 243  Q
    ||||||||| |||||||    
T  1755590 gagaaagcttgcaaccc 1755606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 553767 - 553872
Alignment:
Q  198 tgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgg 297  Q
    ||||||| |||||||||||||| |||  |||||||||||||||||||| ||| ||||||   | ||   ||||||||| ||| |||||||| ||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatgg 553866  T
Q  298 gaaaca 303  Q
     |||||    
T  553867 aaaaca 553872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 1524224 - 1524177
Alignment:
Q  340 gtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagag 387  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||    
T  1524224 gtaccacgtgagatcgagggaagtgaggttggtgaacctttggaagag 1524177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 532653 - 532715
Alignment:
Q  20 agattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagcta 82  Q
    |||||||  ||||||||| ||||||||| ||| ||||||||||| || |||||||||||||||    
T  532653 agattaaccttgcggagtttgaaaagtgataatgaaagagtctccacaccatggagaaagcta 532715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 3437679 - 3437630
Alignment:
Q  187 gttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctc 236  Q
    |||||||||| ||||||| ||||||||||||||||||  |||||||||||    
T  3437679 gttggaacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 661854 - 661962
Alignment:
Q  186 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgt 285  Q
    ||||| ||||||||||||| || ||||||||||| | |  ||||||||||||||| ||||  || ||||||   ||||||  |||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  286 gagtttcaa 294  Q
    || ||||||    
T  661954 gattttcaa 661962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 2373374 - 2373334
Alignment:
Q  349 gaggtcgagggaggtgaggttggtgaatctttggaagaggc 389  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  2373374 gaggtcgagggaggtgaggttggggaacctttggaagaggc 2373334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 2547289 - 2547357
Alignment:
Q  188 ttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatg 256  Q
    ||||||||||||||||| |||||| || | ||||||   || |||||||||||||||| ||||||||||    
T  2547289 ttggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 2547357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 55907736 - 55907684
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcg 237  Q
    ||||||||||||||||||||  ||||||||||||| |||  ||||||||||||    
T  55907736 atgttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcg 55907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 1481722 - 1481761
Alignment:
Q  269 gagagattgagcgatgtgagtttcaatgggaaacatgaga 308  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  1481722 gagatattgagcgatgtgagtttcaatgggaaacaggaga 1481761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 53760271 - 53760237
Alignment:
Q  268 ggagagattgagcgatgtgagtttcaatgggaaac 302  Q
    |||||||||||| ||||||||||||||||||||||    
T  53760271 ggagagattgagtgatgtgagtttcaatgggaaac 53760237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 571330 - 571379
Alignment:
Q  190 ggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgca 239  Q
    ||||||| |||||||||||||||||||||| |||  |||||| |||||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 5106610 - 5106558
Alignment:
Q  192 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaaccca 244  Q
    ||||| ||| |||||||||| || | ||||||| |||||||||||||||||||    
T  5106610 aacaagtgatagatgtcaaatttttcatctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 6417020 - 6417147
Alignment:
Q  118 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 217  Q
    |||||||  |||||| |||||||||||||| ||||| |||||||  ||| |||  | ||||| |  ||||| ||||||| ||||||| ||||||||||||    
T  6417020 gtcaagttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacgatgtgggaacaagtgagagaggtcaaagttgta 6417119  T
Q  218 atctttaaggagaaagctcgcaacccat 245  Q
     |||||  |||||||||||| |||||||    
T  6417120 ttcttttgggagaaagctcgtaacccat 6417147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 7132300 - 7132369
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 254  Q
    ||||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7132369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 7135224 - 7135292
Alignment:
Q  186 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 254  Q
    |||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 7138147 - 7138215
Alignment:
Q  186 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 254  Q
    |||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7138215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 8913481 - 8913374
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatg 284  Q
    |||||||||||| ||||||| ||||||||||||||||||   || ||| || |||||||||  ||||||| |     ||||  ||||| |||||||||||    
T  8913481 atgttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatg 8913382  T
Q  285 tgagtttc 292  Q
    ||||||||    
T  8913381 tgagtttc 8913374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 9412061 - 9412107
Alignment:
Q  127 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactat 173  Q
    |||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  9412061 ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctat 9412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 6423907 - 6423960
Alignment:
Q  192 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccat 245  Q
    ||||| ||||||| ||||||||||| || |||  ||||||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccat 6423960  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 9411955 - 9412023
Alignment:
Q  15 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctat 83  Q
    ||||||||||||| |||  |||| |||||||||  || |||||||||||||||| ||  ||||||||||    
T  9411955 cagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaagctat 9412023  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 32268614 - 32268723
Alignment:
Q  269 gagagattgagcgatgtgagtttcaatgggaaacatgagacttgagacaaaagctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggt 368  Q
    ||||||||||| || |||||||||||||| ||||  |||| |||| | | ||||| |||||| ||||   || | |||| ||||||||||||||||||||    
T  32268614 gagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttgagtttaccgttgaaacacgagaggtcgagggaggtgaggt 32268713  T
Q  369 tggtgaatct 378  Q
    ||||||||||    
T  32268714 tggtgaatct 32268723  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 41900548 - 41900443
Alignment:
Q  192 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagttt 291  Q
    ||||| ||||||| ||||||||||||||||||  ||| |||||||| ||||||  ||| || |||    |||||   ||||| ||||| |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 41900449  T
Q  292 caatgg 297  Q
    ||||||    
T  41900448 caatgg 41900443  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 51763451 - 51763334
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcagg-aatgtaagtttggcgggagagattgagcgat 283  Q
    |||| ||||||| ||||||||||||||||||||||||||   || ||| |||||||||||| || ||| || |||||  ||   ||||||||| || |||    
T  51763451 atgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaag-ctgtttggagagattaagtgat 51763353  T
Q  284 gtgagtttcaatgggaaac 302  Q
    |||||||||||||||||||    
T  51763352 gtgagtttcaatgggaaac 51763334  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 13469777 - 13469641
Alignment:
Q  118 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 217  Q
    |||||||  |||||| || || |||||||| ||||| ||||||| |||| | |||| ||||| |   |||| ||||||| ||||||| ||||  ||||||    
T  13469777 gtcaagttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgta 13469678  T
Q  218 atctttaaggagaaagctcgcaacccatgtgcaggaa 254  Q
     |||||  |||||||||||| ||||||| ||||||||    
T  13469677 ttcttttgggagaaagctcgtaacccatttgcaggaa 13469641  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 1036672 - 1036620
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcg 237  Q
    |||||||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  1036672 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 1036620  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 301
Target Start/End: Original strand, 32151893 - 32152079
Alignment:
Q  115 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagtt 214  Q
    ||||||||||  ||| || ||||||||||| ||||||||||||||||||||  | | || ||||  | | ||    |||||| ||||||| |||||||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagtt 32151992  T
Q  215 gtaatctttaaggagaaagctcgcaacccatgtgcaggaat-gtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaa 301  Q
    ||||| |||  |||||||||| | | |||||   |||| || |||||||| |  |||||||||||| |||||||| ||||| ||||||    
T  32151993 gtaatgttttgggagaaagcttgtatcccattcacaggtatggtaagttt-gttggagagattgagtgatgtgaggttcaacgggaaa 32152079  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 14004140 - 14004244
Alignment:
Q  187 gttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtg 286  Q
    |||||||||||| || || |||||||||||||| ||    |||||||||||||| ||||  ||||||| |   | ||||  ||| |||||||||||||||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  287 agttt 291  Q
    |||||    
T  14004240 agttt 14004244  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 17642913 - 17642873
Alignment:
Q  268 ggagagattgagcgatgtgagtttcaatgggaaacatgaga 308  Q
    |||||||||||| ||||||||||||||||| ||||| ||||    
T  17642913 ggagagattgagtgatgtgagtttcaatggaaaacaagaga 17642873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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