View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3702_high_3 (Length: 420)
Name: NF3702_high_3
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3702_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 3529810 - 3529395
Alignment:
| Q |
1 |
ttattgtatggttgtttgtaaataatattatcatagctaagtcacaatttaattattattttgtttacaactgactgatgaggtgtgtggcagacatttg |
100 |
Q |
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| T |
3529810 |
ttattgtatggttgtttgtaaataatattatcatagctaagtcacaatttaattattattttgtttacaactgactgatgaggtgtgtggcagacatttg |
3529711 |
T |
|
| Q |
101 |
acctaagaaggggatggcatgtgggtgtcaatgtgcagcctagtgcagaaagaaatacgacattgacgttgactctcaatcttcatttgtaaactatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||| |
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| T |
3529710 |
acctaagaaggggatggcatgtgggtgtcaatgtgcagcctagtgcaggaagaaatac-acattgacgttgactctcaatcttcatttgtaaattgtctt |
3529612 |
T |
|
| Q |
201 |
atttttcaaaatataaaatgaagnnnnnnnnaatgcataaaaataaaattatatcatggttttacccttatacagctaaaactatagtaacagaattagt |
300 |
Q |
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||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
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| T |
3529611 |
atttttcaaaatataaaatgaagttttttttaaggcataaaaataacattatatcatggttttacccttatactgctaaatctatagtaacagagttagt |
3529512 |
T |
|
| Q |
301 |
attttccctccaattcttacaaaaaatggagagtgtgagtgaccatttaatacgtgaaatgaatattatcgttctttgtaa--ctctcgtatttgattac |
398 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
3529511 |
atttttcctccaattcttacaagaaatggagagtgtgagtgaccatttaatacgtgaaatgaatattatcgttctttgtaactctctcatatttgattac |
3529412 |
T |
|
| Q |
399 |
aatcgtgtgatctcatt |
415 |
Q |
| |
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||||||||||||||||| |
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| T |
3529411 |
aatcgtgtgatctcatt |
3529395 |
T |
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