View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3702_high_9 (Length: 248)
Name: NF3702_high_9
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3702_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 10085549 - 10085618
Alignment:
| Q |
169 |
ttaatgcaattgtatcattctaaaaatataatgattttaaaagttatgtacatggtaataattagatgat |
238 |
Q |
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| T |
10085549 |
ttaatgcaattgtatcattctaaaaatataatgattttaaaagttatgtaaatggtaataattagatgat |
10085618 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 10085506 - 10085553
Alignment:
| Q |
16 |
tttttgttggtgggtctaaagcaaaggatttgtcagccttaccttaat |
63 |
Q |
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| T |
10085506 |
tttttgttggtgggtctaaagcaaaggatttgttagccttaccttaat |
10085553 |
T |
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