View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3702_low_10 (Length: 250)

Name: NF3702_low_10
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3702_low_10
NF3702_low_10
[»] scaffold0648 (1 HSPs)
scaffold0648 (12-250)||(6233-6471)
[»] scaffold0274 (1 HSPs)
scaffold0274 (12-250)||(16987-17225)
[»] chr1 (5 HSPs)
chr1 (12-250)||(41426745-41426983)
chr1 (20-243)||(41442753-41442976)
chr1 (12-238)||(41449366-41449592)
chr1 (20-238)||(41432151-41432369)
chr1 (162-214)||(7237890-7237942)
[»] chr7 (1 HSPs)
chr7 (12-247)||(7762543-7762780)
[»] chr2 (3 HSPs)
chr2 (20-243)||(33364091-33364314)
chr2 (12-243)||(33370436-33370667)
chr2 (178-227)||(5838961-5839010)
[»] chr8 (1 HSPs)
chr8 (24-232)||(21223400-21223608)


Alignment Details
Target: scaffold0648 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 6471 - 6233
Alignment:
Q  12 atgaaccgagagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 111  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6471 atgaaccgagagtagaaccaaaccttaggaggacttctcatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 6372  T
Q  112 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6371 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 6272  T
Q  212 tagcattgttgaaacacctggagtccacatctcatcctc 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6271 tagcattgttgaaacacctggagtccacatctcatcctc 6233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 16987 - 17225
Alignment:
Q  12 atgaaccgagagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 111  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16987 atgaaccgagagtagaaccaaaccttaggaggacttctcatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 17086  T
Q  112 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17087 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 17186  T
Q  212 tagcattgttgaaacacctggagtccacatctcatcctc 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17187 tagcattgttgaaacacctggagtccacatctcatcctc 17225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41426983 - 41426745
Alignment:
Q  12 atgaaccgagagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41426983 atgaaccgagagtagaaccaaaccttaggaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 41426884  T
Q  112 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 211  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41426883 tcttttcaccatctggtgagccactcgctctttcatattcaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 41426784  T
Q  212 tagcattgttgaaacacctggagtccacatctcatcctc 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41426783 tagcattgttgaaacacctggagtccacatctcatcctc 41426745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 41442976 - 41442753
Alignment:
Q  20 agagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctctcttttca 119  Q
    ||||||||||||||||||| || ||||| |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  41442976 agagtagaaccaaaccttaggacgactttttataatagaaatcattgtcctcaatgatagaatgaatgtatcctcgttatactgtagggctttctgttca 41442877  T
Q  120 ccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttgtagcattg 219  Q
    |||  | |||||||||||     ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  41442876 ccacttcgtgagccactcttgtattcatatccaggttcattatagtaaggcttcgcgttcaagattagaccttttatggagactagaacctgtagcattg 41442777  T
Q  220 ttgaaacacctggagtccacatct 243  Q
    | ||||||||||||| ||||||||    
T  41442776 tcgaaacacctggagcccacatct 41442753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 41449592 - 41449366
Alignment:
Q  12 atgaaccgagagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 111  Q
    ||||||| ||||||  ||||||||||  ||||  |||| ||||||||  |||||||| |||  || ||||||||||||||||| ||||||  || |||||    
T  41449592 atgaaccaagagtaagaccaaacctttggaggctttctaatcatatacatcattgtcttcagcgaaagaatgaatgtatcctcattatacaacatggctc 41449493  T
Q  112 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 211  Q
    ||||||||||||||  | ||| ||||  |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41449492 tcttttcaccatctattaagcgactcattatttcatatccaggttcattatagtaaggctttgcgttcaagattagaccttgtatggagactagaacctg 41449393  T
Q  212 tagcattgttgaaacacctggagtcca 238  Q
    |||||||||||||||||||||||||||    
T  41449392 tagcattgttgaaacacctggagtcca 41449366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 41432369 - 41432151
Alignment:
Q  20 agagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctctcttttca 119  Q
    ||||||||||||||||||  ||||  |||||||| ||||   ||||||| |||  |||||||||||||||| ||| |||||||||||||   ||  ||||    
T  41432369 agagtagaaccaaacctttggaggctttcttatcgtatacagcattgtcttcagcgatagaatgaatgtattctcattatactgcagggaattcgcttca 41432270  T
Q  120 ccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttgtagcattg 219  Q
    ||| | |||  |||  |||    | |  ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41432269 ccacccggtttgcccttcgaaggtgcccatccaggttcattgaagtaaggctttgcattcaagattagaccttgtatggagactagaacttgtagcattg 41432170  T
Q  220 ttgaaacacctggagtcca 238  Q
    | |||||||||||||||||    
T  41432169 tcgaaacacctggagtcca 41432151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 7237890 - 7237942
Alignment:
Q  162 aagtaaggctttgcgttcaagattagaccttgtatggagactagaacttgtag 214  Q
    |||||||| |||||  |||||| |||||||||||||||||||| ||| |||||    
T  7237890 aagtaaggttttgcagtcaagactagaccttgtatggagactataacctgtag 7237942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 7762543 - 7762780
Alignment:
Q  12 atgaaccgagagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggct- 110  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||  ||||||| |||||| |||| ||      
T  7762543 atgaaccaagagtagaaccaaaccttaggagaacttcttatcatatacgtcattgtcctcactgatagaatgaacatatcctcattataccgcagagcct 7762642  T
Q  111 -ctcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaact 209  Q
     || |||||||||||| ||| |||| |  |  ||  | ||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||     
T  7762643 cctattttcaccatctcgtgggccaataccgtctaaaaatccagactcattaaagtaaggctttgcattcaagattagaccttgtatggagacgagaacc 7762742  T
Q  210 tgtagcattgttgaaacacctggagtccacatctcatc 247  Q
    ||  ||||||| ||||||||||||||||||||||||||    
T  7762743 tgatgcattgtcgaaacacctggagtccacatctcatc 7762780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 33364314 - 33364091
Alignment:
Q  20 agagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctctcttttca 119  Q
    ||||||||||||||||||| ||||| ||||||||| | | ||||||||||||| ||| |||||||| |||| ||| ||||||||||| |   ||  ||||    
T  33364314 agagtagaaccaaaccttaggaggatttcttatcacagacgtcattgtcctcactgaaagaatgaacgtattctcattatactgcagtgacatcacttca 33364215  T
Q  120 ccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttgtagcattg 219  Q
    ||   ||  |||||||||     | |||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||    
T  33364214 ccccttgacgagccactcaaagatgcatatccaggttcattgaagtaaggcttcgcattcaagattagcccttgtatggagactagaacctgtagcattg 33364115  T
Q  220 ttgaaacacctggagtccacatct 243  Q
    | ||||||||||||||||||||||    
T  33364114 tcgaaacacctggagtccacatct 33364091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 33370667 - 33370436
Alignment:
Q  12 atgaaccgagagtagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctc 111  Q
    ||||||| | ||| ||||||||||||  ||||  |||| ||||||||  |||||||| |||| ||||||||||| |||| ||| |||||||||||||       
T  33370667 atgaaccaaaagtggaaccaaacctttggaggctttctaatcatatacatcattgtcttcaacgatagaatgaacgtattctcattatactgcagggaat 33370568  T
Q  112 tcttttcaccatctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttg 211  Q
    ||  ||||||| | |||  |||  |||    | |  ||||||||||||| |||||||||||||| ||||||||||||  |||||||||||||||||| ||    
T  33370567 tcgcttcaccacccggtttgcccttcgaaggtgcccatccaggttcattgaagtaaggctttgcattcaagattagaatttgtatggagactagaacctg 33370468  T
Q  212 tagcattgttgaaacacctggagtccacatct 243  Q
    ||||||||| ||||||||||||||||||||||    
T  33370467 tagcattgtcgaaacacctggagtccacatct 33370436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 5838961 - 5839010
Alignment:
Q  178 tcaagattagaccttgtatggagactagaacttgtagcattgttgaaaca 227  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||||||    
T  5838961 tcaagactagaccttgaatggagactagaacctgtagaattgttgaaaca 5839010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 21223400 - 21223608
Alignment:
Q  24 tagaaccaaaccttaagaggacttcttatcatatatgtcattgtcctcaatgatagaatgaatgtatcctcgttatactgcagggctctcttttcaccat 123  Q
    ||||| ||||||||  |||| |||||||||| |||   ||||||||||||||| |  | ||| || ||||| |||||| |||||| |||| ||||||| |    
T  21223400 tagaatcaaacctttggaggccttcttatcagatagaccattgtcctcaatgacaagaggaaagtgtcctcattataccgcagggatctcatttcaccct 21223499  T
Q  124 ctggtgagccactcgctccttcatatccaggttcattaaagtaaggctttgcgttcaagattagaccttgtatggagactagaacttgtagcattgttga 223  Q
    |||  || |||||    | | |||||||||| ||||||||||||||| |||  |||||||||||||||||||||||||| || || ||||  ||||||||    
T  21223500 ctgcagatccacttaggcgtgcatatccaggctcattaaagtaaggcattgtattcaagattagaccttgtatggagaccaggacctgtaaaattgttga 21223599  T
Q  224 aacacctgg 232  Q
    |||||||||    
T  21223600 aacacctgg 21223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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