View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3702_low_13 (Length: 218)
Name: NF3702_low_13
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3702_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 52012067 - 52012243
Alignment:
| Q |
23 |
ccttcaattcctctcttgaggaagggttcatgaatgggagaatcaagagaaaatggaacattnnnnnnnnnnnnnnnnngggttaagtttaagattatac |
122 |
Q |
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| T |
52012067 |
ccttcaattcctctcttgaggaagggttcatgaatgggagaatcaagagaaaatggaacatttgatgatgatgatgatggggttaagtttaagattatac |
52012166 |
T |
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| Q |
123 |
caatttctttgtcggaaaaaccgtgacccttgagttgttttgtgatagaatcaacatcgctgagtggaggaacagaa |
199 |
Q |
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| T |
52012167 |
caatttctttgtcggaaaaaccgtgacccttgagttgttttgtgacagaatcaacatcgctgagtggaggaacagaa |
52012243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 52002192 - 52002243
Alignment:
| Q |
121 |
accaatttctttgtcggaaaaaccgtgacccttgagttgttttgtgatagaa |
172 |
Q |
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| T |
52002192 |
accaatttctttgttggaaaaaccgtggccctttagttgttctgtgatagaa |
52002243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 25623747 - 25623806
Alignment:
| Q |
24 |
cttcaattcctctcttgaggaagggttcatgaatgggagaatcaagagaaaatggaacat |
83 |
Q |
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| T |
25623747 |
cttcaattcctctcttgagaaagggttcatgaataggagattcaagagaaaaaggaacat |
25623806 |
T |
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