View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3702_low_6 (Length: 346)
Name: NF3702_low_6
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3702_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 35827127 - 35826803
Alignment:
| Q |
7 |
attctccctttatcatctcctttgtcttgcagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagc |
106 |
Q |
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| T |
35827127 |
attctccttttatcatctcctttgtcttgcagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagc |
35827028 |
T |
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| Q |
107 |
gctttattaagccaaaattgtctcaaacagatttcaccattgcccattatgctggagaggtatgcctagctctttccaaaatggttcactgcaannnnnn |
206 |
Q |
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| T |
35827027 |
gctttattaagccaaaattgtctcaaacagatttcaccattgcccattatgctggagaggtatgcctagctctttccaaaatggtttgctgcaatttttt |
35826928 |
T |
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| Q |
207 |
nactgcatattcatttttactgtcataaatatgcaggtgacataccaatctgaccattttttagacaaaaacaaggattatgtggttcctgaatatcaag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35826927 |
tactgcatattcatttttactgtcataaatatgcaggtgacataccaatctgaccattttttagacaaaaacaaggattatgtggttcctgaatatcaag |
35826828 |
T |
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| Q |
307 |
atttattgattgcttccaaatgtcc |
331 |
Q |
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| T |
35826827 |
atttattgattgcttccaaatgtcc |
35826803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 31005849 - 31005757
Alignment:
| Q |
34 |
tgcagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagcgctttattaagccaaaattg |
126 |
Q |
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| T |
31005849 |
tgcagcatgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagccaaaattg |
31005757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 31182950 - 31182858
Alignment:
| Q |
34 |
tgcagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagcgctttattaagccaaaattg |
126 |
Q |
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| T |
31182950 |
tgcagcatgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagccaaaattg |
31182858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 3956050 - 3956085
Alignment:
| Q |
33 |
ttgcagcatgtttccaaagtcaacacatgaaacatt |
68 |
Q |
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| T |
3956050 |
ttgcagcatgtttccaaaatcaacacatgaaacatt |
3956085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 47696454 - 47696596
Alignment:
| Q |
28 |
ttgtcttgcagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagcgctttattaagccaaaattgt |
127 |
Q |
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| T |
47696454 |
ttgtctttcagcatgtttccgaagtcaacacatgaaacattttcgaacaagctttatcaaacatttaagaatcacaagcgctttattaaaccaaaattgt |
47696553 |
T |
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| Q |
128 |
ctcaaacagatttcaccattgcccattatgctggagaggtatg |
170 |
Q |
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| T |
47696554 |
ctcgaacagattttactattgctcattatgcaggcgaggtatg |
47696596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 47696649 - 47696760
Alignment:
| Q |
218 |
catttttactgtcataaatatgcaggtgacataccaatctgaccattttttagacaaaaacaaggattatgtggttcctgaatatcaagatttattgatt |
317 |
Q |
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| T |
47696649 |
catttctactgttgtaaatgtgcaggtgcagtaccagtctgaccaatttttagataaaaacaaggattacgtggttcctgaacatcaagatttattgagt |
47696748 |
T |
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| Q |
318 |
gcttccaaatgt |
329 |
Q |
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| T |
47696749 |
tcttccaaatgt |
47696760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 52152583 - 52152450
Alignment:
| Q |
36 |
cagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagcgctttattaagccaaaattgtctcaaaca |
135 |
Q |
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|||||||||||| ||||| || |||||||| ||||| | ||| | || || ||||| || || |||||||||||||| || |||||| | |||| ||| |
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| T |
52152583 |
cagcatgtttcctaagtctacgcatgaaacgtttgctcagaagttgtaccagacattcaaaaacaacaagcgctttatcaaaccaaaactttctcgaact |
52152484 |
T |
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| Q |
136 |
gatttcaccattgcccattatgctggagaggtat |
169 |
Q |
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| T |
52152483 |
aatttcacaatatctcattatgctggagaggtat |
52152450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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