View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3702_low_9 (Length: 263)
Name: NF3702_low_9
Description: NF3702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3702_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 28092080 - 28091827
Alignment:
| Q |
1 |
aactatccctagctgataagacacatgtgaatgaaatctccaacattcatatcctacctaaatcacttcttttgggtgatcatgagacagatgaaggcca |
100 |
Q |
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| T |
28092080 |
aactatccctagctgataacacacatgtgaatgacatcttcaacattcatatcctacctaaatcacttcttttgggtgatcatgagacagatgaaggcca |
28091981 |
T |
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| Q |
101 |
caatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaactacaacgagttat |
200 |
Q |
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| T |
28091980 |
caatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaactacaacgagttat |
28091881 |
T |
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| Q |
201 |
cagccatacgccggtgtacctgaagnnnnnnntattagattgaaatagtattat |
254 |
Q |
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| T |
28091880 |
cagccatacgccggtgtacctgaagaaaaaaatattagattgaaatagtattat |
28091827 |
T |
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Back To:
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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 41039892 - 41040022
Alignment:
| Q |
91 |
atgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaactac |
190 |
Q |
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|||||||| ||||| || |||| ||| || | |||||||| ||| ||||||||| |||| ||||||| || |||||| || |||||||||||||||| |
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| T |
41039892 |
atgaaggctacaattcgggcaattattccattcaaaatgagtacaagtagacaaatgagccattcattgagatcataaccactgttcatcagtgaactac |
41039991 |
T |
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| Q |
191 |
aacgagttatcagccatacgccggtgtacct |
221 |
Q |
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| T |
41039992 |
aacgagttatcaaccatactccagtgtacct |
41040022 |
T |
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