View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3703_low_1 (Length: 536)
Name: NF3703_low_1
Description: NF3703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3703_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 242 - 526
Target Start/End: Original strand, 17812825 - 17813108
Alignment:
| Q |
242 |
ctaattactcatatgaaaagttggtggcatcacccaaacaacattgtgattaagannnnnnngaacccaacatgttttttcagcaacataagtgagaacc |
341 |
Q |
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| T |
17812825 |
ctaattactcatatgaaaagttggtggcatcacccaaacaacattgtgattaaaattcttttgaacccaacatggtttttaagcaacataagtgagaacc |
17812924 |
T |
|
| Q |
342 |
tatcatattaaagcatattaatatatattttttaacaaaatacataagatattaaaattcctctacaacatgttatactaaccacatcttttattggttt |
441 |
Q |
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| T |
17812925 |
tatcatattaaagcagattaatatataacttttaacaaaatacataagatattaaagttcctctgcaacat-ttacagtaaccacatcttttattggttt |
17813023 |
T |
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| Q |
442 |
ttcaggacaaagacattcaatgtcagcatgagttgcagtcatattatgagtgctcatcaatggttcactaacaaatagagtataa |
526 |
Q |
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| T |
17813024 |
ttcaggacaaagacattcaatgtcagcacgagttgcagtcatattatgagtgctcatcaatggttcactaacaaatagagtataa |
17813108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 17812585 - 17812752
Alignment:
| Q |
1 |
aaatgcagtgacactaaatttttataaatgcttatcaagaagaaaccattcaaataaaaaacatgtattcaaattcactcacttatttcaatgtctgaaa |
100 |
Q |
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| T |
17812585 |
aaatgcagtgacactaaatttttataaatgcttatcaagaagaaaccattcaaataaaaaacatgtattcaaattcactcacttatttcaatgtctgaaa |
17812684 |
T |
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| Q |
101 |
tggttccatccaatgccttgtatatctatccataagttcataaaatatagatccattaaaaacatcttc |
169 |
Q |
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| T |
17812685 |
tggttccatccaatgccttgtatatttatccataagttcataaaatatagat-cattaaaaacatcttc |
17812752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 242 - 523
Target Start/End: Original strand, 9417342 - 9417625
Alignment:
| Q |
242 |
ctaattactcatatgaaaagttggtggcatcacccaaacaacattgtgattaagannnnnnngaacccaacatgttttttcagcaacataagtgagaacc |
341 |
Q |
| |
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|||| |||||| |||||||||||| ||||||||||||||| |||||||| ||||| ||||||| ||||||||| ||||||||||| |||||||| |
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| T |
9417342 |
ctaactactcacatgaaaagttggcggcatcacccaaacagcattgtgactaagattcttttgaacccagcatgtttttccagcaacataactgagaacc |
9417441 |
T |
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| Q |
342 |
tatcatattaaagcatattaatatata--ttttttaacaaaatacataagatattaaaattcctctacaacatgttatactaaccacatcttttattggt |
439 |
Q |
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| T |
9417442 |
tatcatattaaagcagattgatatatactttttttaacaaaatacataagatattaaaattcctctacaacgtgtaatactaaccacatcttttattggt |
9417541 |
T |
|
| Q |
440 |
ttttcaggacaaagacattcaatgtcagcatgagttgcagtcatattatgagtgctcatcaatggttcactaacaaatagagta |
523 |
Q |
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| T |
9417542 |
tttccaggacaaagacattcaatgtcagcacgagttgcaaccatattatgagtggtcatcaatggttcactgaaaaatagagta |
9417625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 9417119 - 9417273
Alignment:
| Q |
15 |
taaatttttataaatgcttatcaagaagaaaccattcaaataaaaaacatgtattcaaattcactcacttatttcaatgtctgaaatggttccatccaat |
114 |
Q |
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| T |
9417119 |
taaatttttataaatgcttataaagaagaaaccattcaaataaaaaacatgtattcacattcactcacatatttcaatgtctgaaatgagaccatccaat |
9417218 |
T |
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| Q |
115 |
gccttgtatatctatccataagttcataaaatatagatccattaaaaacatcttc |
169 |
Q |
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|||||||||| |||||||||||||||||| | ||| |||||||||||||||||| |
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| T |
9417219 |
gccttgtatagttatccataagttcataaagtgtagctccattaaaaacatcttc |
9417273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 418 - 526
Target Start/End: Complemental strand, 12004037 - 12003929
Alignment:
| Q |
418 |
actaaccacatcttttattggtttttcaggacaaagacattcaatgtcagcatgagttgcagtcatattatgagtgctcatcaatggttcactaacaaat |
517 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||| | |||| |
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| T |
12004037 |
actaaccacatcttttattggttttctaggacaaagacattcaatgtcaacacgagttgcaaccatattatgagtggtcatcaatggttcactgaaaaat |
12003938 |
T |
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| Q |
518 |
agagtataa |
526 |
Q |
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||||||||| |
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| T |
12003937 |
agagtataa |
12003929 |
T |
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