View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3703_low_2 (Length: 417)

Name: NF3703_low_2
Description: NF3703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3703_low_2
NF3703_low_2
[»] chr3 (9 HSPs)
chr3 (23-259)||(52275438-52275672)
chr3 (285-410)||(52275665-52275790)
chr3 (285-410)||(54760449-54760573)
chr3 (229-259)||(26066968-26066998)
chr3 (230-259)||(12007168-12007197)
chr3 (285-410)||(26066851-26066975)
chr3 (285-410)||(42375082-42375206)
chr3 (285-410)||(42403796-42403920)
chr3 (230-259)||(54760427-54760456)
[»] chr4 (6 HSPs)
chr4 (285-410)||(54959919-54960043)
chr4 (228-259)||(36040821-36040852)
chr4 (229-259)||(54959896-54959926)
chr4 (285-410)||(36040704-36040828)
chr4 (230-259)||(37082652-37082681)
chr4 (130-190)||(44358604-44358664)
[»] chr6 (3 HSPs)
chr6 (285-410)||(5325887-5326011)
chr6 (230-259)||(30698610-30698639)
chr6 (346-410)||(18273102-18273166)
[»] chr1 (14 HSPs)
chr1 (97-224)||(29492315-29492442)
chr1 (35-224)||(13345892-13346079)
chr1 (285-410)||(46387904-46388028)
chr1 (229-259)||(50985593-50985623)
chr1 (285-410)||(4297232-4297356)
chr1 (285-410)||(7733578-7733702)
chr1 (230-259)||(11166965-11166994)
chr1 (285-410)||(37381572-37381696)
chr1 (346-410)||(7698918-7698982)
chr1 (231-259)||(7733695-7733723)
chr1 (346-410)||(11166848-11166912)
chr1 (97-169)||(29490318-29490390)
chr1 (346-410)||(41767889-41767953)
chr1 (231-259)||(46388021-46388049)
[»] chr7 (4 HSPs)
chr7 (350-410)||(22882978-22883038)
chr7 (230-259)||(29054697-29054726)
chr7 (230-259)||(34346808-34346837)
chr7 (230-259)||(46369677-46369706)
[»] chr2 (5 HSPs)
chr2 (285-341)||(1074238-1074293)
chr2 (346-410)||(29609046-29609110)
chr2 (228-259)||(13098271-13098302)
chr2 (229-259)||(29609163-29609193)
chr2 (285-410)||(13098295-13098419)
[»] chr8 (3 HSPs)
chr8 (285-410)||(44843213-44843337)
chr8 (367-410)||(37742062-37742105)
chr8 (230-259)||(44843330-44843359)
[»] chr5 (4 HSPs)
chr5 (370-404)||(125539-125573)
chr5 (229-259)||(125621-125651)
chr5 (230-259)||(20405098-20405127)
chr5 (230-259)||(20407705-20407734)
[»] scaffold2013 (1 HSPs)
scaffold2013 (230-259)||(722-751)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 52275438 - 52275672
Alignment:
Q  23 acatcaagtacatgttcaaaatctataagcctacacattcattcacattttgtgtgttagggttttagaaggttgttaatatgattgtgagttagaaata 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52275438 acatcaagtacatgttcaaaatctataagcctacacattcattcacattttgtgtgttagggttttagaaagttgttaatatgattgtgagttagaaata 52275537  T
Q  123 tctttagttatttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaattatatattaatggaatgtgatagtctaaaaattg 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  52275538 tctttagttatttggataattattgatc-attagaaagttgtttttactataaatgtagtttaaattatatattaatgg-atgtggtagtctaaaaattg 52275635  T
Q  223 aattgaaatctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  52275636 aattgaaatctctcttaatataagaagagaagatgtt 52275672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 52275665 - 52275790
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275665 aagatgttgtggaaaacctattattaccccaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 52275764  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    ||||||||||||||||||||||||||    
T  52275765 tgaccacaattaactatgatgatgtc 52275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 54760449 - 54760573
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    |||||||||||||||| |||||||||||||| || |||||| ||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  54760449 aagatgttgtggaaaatctattattaccctatgccggttgg-ttgacaaatcacataattgagggtaaaagttgtcctaaaattactttattgaactaaa 54760547  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    |||||| || |||||| |||||||||    
T  54760548 tgaccataactaactacgatgatgtc 54760573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 26066998 - 26066968
Alignment:
Q  229 aatctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||||    
T  26066998 aatctctcttaatataagaagagaagatgtt 26066968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 12007168 - 12007197
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  12007168 atctctcttaatataagaagagaagatgtt 12007197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 26066975 - 26066851
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  26066975 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 26066877  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  26066876 ttaccacaattaactaagatgatgtc 26066851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 42375206 - 42375082
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  42375206 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 42375108  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  42375107 ttaccacaattaactaagatgatgtc 42375082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 42403920 - 42403796
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  42403920 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 42403822  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  42403821 ttaccacaattaactaagatgatgtc 42403796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 54760427 - 54760456
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  54760427 atctctcttaatataagaagagaagatgtt 54760456  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 54959919 - 54960043
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    |||||||||||||||| ||||||||| ||||| || |  |||||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  54959919 aagatgttgtggaaaatctattattatcctaa-cttgagggcttgtcaaatcacacaattgaaggtaaaagttgtctaaaaattactttattgtactaaa 54960017  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    ||||||||||||||||||||||||||    
T  54960018 tgaccacaattaactatgatgatgtc 54960043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 259
Target Start/End: Complemental strand, 36040852 - 36040821
Alignment:
Q  228 aaatctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||||    
T  36040852 aaatctctcttaatataagaagagaagatgtt 36040821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 54959896 - 54959926
Alignment:
Q  229 aatctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||||    
T  54959896 aatctctcttaatataagaagagaagatgtt 54959926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 36040828 - 36040704
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  36040828 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 36040730  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  36040729 ttaccacaattaactaagatgatgtc 36040704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 37082652 - 37082681
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  37082652 atctctcttaatataagaagagaagatgtt 37082681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 44358664 - 44358604
Alignment:
Q  130 ttatttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaatta 190  Q
    |||||||| ||||| |||||||||||||  |||||||||| ||| ||||| | ||||||||    
T  44358664 ttatttgggtaattgttgatcaattagacggttgtttttaatatgaatgtggcttaaatta 44358604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 5325887 - 5326011
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    |||||||||||||||| |||||||||||||| || |||||| ||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  5325887 aagatgttgtggaaaatctattattaccctatgccggttgg-ttgacaaatcacataattgagggtaaaagttgtcctaaaattactttattgaactaaa 5325985  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    |||||| || |||||| |||||||||    
T  5325986 tgaccataactaactacgatgatgtc 5326011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 30698639 - 30698610
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  30698639 atctctcttaatataagaagagaagatgtt 30698610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 18273166 - 18273102
Alignment:
Q  346 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  18273166 agggtaaaatctgtctttaatttactttattcaaccaaattaccacaattaactaagatgatgtc 18273102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 29492442 - 29492315
Alignment:
Q  97 gttaatatgattgtgagttagaaatatctttagttatttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaattatatatt 196  Q
    |||||||||||||||| || ||||||||||| |||||||||| |||| |||||||||||||| || ||||||||  | |||||||||||| ||| | |||    
T  29492442 gttaatatgattgtgaattggaaatatctttggttatttggacaattgttgatcaattagaatgtagtttttaccgtgaatgtagtttaagttaaacatt 29492343  T
Q  197 aatggaatgtgatagtctaaaaattgaa 224  Q
    | || |||||  |||  |||||||||||    
T  29492342 attgcaatgtattagcataaaaattgaa 29492315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 13346079 - 13345892
Alignment:
Q  35 tgttcaaaatctataagcctacacattcattcacattttgtgtgttagggttttagaaggttgttaa-tatgattgtgagttagaaatatctttagttat 133  Q
    |||||||||||||  || || ||||||| |||||||||| | |||||||  ||| |||| ||||||| ||||||||||| || |||   | |||||||||    
T  13346079 tgttcaaaatcta--agtctgcacattccttcacattttatatgttaggaattttgaag-ttgttaaatatgattgtgaatttgaatgttgtttagttat 13345983  T
Q  134 ttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaattatatattaatggaatgtgatagtctaaaaattgaa 224  Q
    || | || || ||| |||||||||| |||  ||||||||||||||||||||||| ||  ||||| || ||| || |||| ||| |||||||    
T  13345982 ttaggtacttgttggtcaattagaaggtttattttactataaatgtagtttaaaataagtattagtgcaatttggtagtataagaattgaa 13345892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 46388028 - 46387904
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | ||||||||| ||||||  || |||||||||| ||| |||    
T  46388028 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaa 46387930  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  46387929 ttaccacaattaactaagatgatgtc 46387904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 50985593 - 50985623
Alignment:
Q  229 aatctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||||    
T  50985593 aatctctcttaatataagaagagaagatgtt 50985623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 4297356 - 4297232
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  4297356 aagatgttgtggaaatcctattaatgccccagtctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 4297258  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  4297257 ttaccacaattaactaagatgatgtc 4297232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 7733702 - 7733578
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  7733702 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 7733604  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  7733603 ttaccacaattaactaagatgatgtc 7733578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 11166994 - 11166965
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  11166994 atctctcttaatataagaagagaagatgtt 11166965  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 37381572 - 37381696
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  37381572 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 37381670  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  37381671 ttaccacaattaactaagatgatgtc 37381696  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 7698918 - 7698982
Alignment:
Q  346 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  7698918 agggtaaaatctgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 7698982  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 7733723 - 7733695
Alignment:
Q  231 tctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||    
T  7733723 tctctcttaatataagaagagaagatgtt 7733695  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 11166912 - 11166848
Alignment:
Q  346 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  11166912 agggtaaaatctgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 11166848  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 29490318 - 29490390
Alignment:
Q  97 gttaatatgattgtgagttagaaatatctttagttatttggataattattgatcaattagaaagttgttttta 169  Q
    |||||||||||||||| ||| ||||||| || ||||||| || |||  |||||| ||||||| || |||||||    
T  29490318 gttaatatgattgtgaattaaaaatatccttggttatttagacaatcgttgatcgattagaatgtagttttta 29490390  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 41767889 - 41767953
Alignment:
Q  346 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  41767889 agggtaaaatctgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 41767953  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 46388049 - 46388021
Alignment:
Q  231 tctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||    
T  46388049 tctctcttaatataagaagagaagatgtt 46388021  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 22883038 - 22882978
Alignment:
Q  350 taaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22883038 taaaagttatttaaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 22882978  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 29054726 - 29054697
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  29054726 atctctcttaatataagaagagaagatgtt 29054697  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 34346837 - 34346808
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  34346837 atctctcttaatataagaagagaagatgtt 34346808  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 46369706 - 46369677
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  46369706 atctctcttaatataagaagagaagatgtt 46369677  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 1074238 - 1074293
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacaca 341  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  1074238 aagatgttgtggaaaatctattattaccctatgctggttgg-ttgacaaatcacaca 1074293  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 29609110 - 29609046
Alignment:
Q  346 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    ||||||||| ||||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  29609110 agggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 29609046  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 259
Target Start/End: Original strand, 13098271 - 13098302
Alignment:
Q  228 aaatctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||||    
T  13098271 aaatctctcttaatataagaagagaagatgtt 13098302  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 29609193 - 29609163
Alignment:
Q  229 aatctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||||    
T  29609193 aatctctcttaatataagaagagaagatgtt 29609163  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 13098295 - 13098419
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  13098295 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 13098393  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | |||||||||||||| |||||||||    
T  13098394 ttaccacaattaactaagatgatgtc 13098419  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 44843337 - 44843213
Alignment:
Q  285 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 384  Q
    ||||||||||||||| ||||||| | ||| || ||||||   ||| ||||||||  || | ||||||||| ||||||  || |||||||||| ||| |||    
T  44843337 aagatgttgtggaaatcctattaatgccccaacctggttaa-ttgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaa 44843239  T
Q  385 tgaccacaattaactatgatgatgtc 410  Q
    | || ||||||||||| |||||||||    
T  44843238 ttacaacaattaactaagatgatgtc 44843213  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 37742062 - 37742105
Alignment:
Q  367 ttactttattgaactaaatgaccacaattaactatgatgatgtc 410  Q
    |||||||||| |||||||| |||||||||||||| |||||||||    
T  37742062 ttactttattcaactaaattaccacaattaactaagatgatgtc 37742105  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 44843359 - 44843330
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  44843359 atctctcttaatataagaagagaagatgtt 44843330  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 125573 - 125539
Alignment:
Q  370 ctttattgaactaaatgaccacaattaactatgat 404  Q
    ||||||||||||||||||||| |||||||||||||    
T  125573 ctttattgaactaaatgaccataattaactatgat 125539  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 125651 - 125621
Alignment:
Q  229 aatctctcttaatataagaagagaagatgtt 259  Q
    |||||||||||||||||||||||||||||||    
T  125651 aatctctcttaatataagaagagaagatgtt 125621  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 20405127 - 20405098
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  20405127 atctctcttaatataagaagagaagatgtt 20405098  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 20407734 - 20407705
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  20407734 atctctcttaatataagaagagaagatgtt 20407705  T

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Target: scaffold2013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 722 - 751
Alignment:
Q  230 atctctcttaatataagaagagaagatgtt 259  Q
    ||||||||||||||||||||||||||||||    
T  722 atctctcttaatataagaagagaagatgtt 751  T

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