View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3703_low_3 (Length: 303)
Name: NF3703_low_3
Description: NF3703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3703_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 25899647 - 25899361
Alignment:
| Q |
15 |
aaatacgacggctcatggcggaaaatgtggctcttatggccaaggttgcgatttgacggtaagcacagctatctcttatttcatagccttatttcctgct |
114 |
Q |
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| T |
25899647 |
aaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgatggtaagcacaactatctcttattgcatagccttatttcctgat |
25899548 |
T |
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| Q |
115 |
cttcatatt----gattagtgacctgtgatggttaagtttttttatcgccatgg---gnnnnnnnnnnngcatactaatttccctagattgtgtgattat |
207 |
Q |
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| T |
25899547 |
cttcatattgattgattagtgacctgtgatggttaagtttttttatcgccatggtttttttttttttttgcatactaatttccctagattgtgtgattat |
25899448 |
T |
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| Q |
208 |
gaaaggttaaacttgaaatgagaat-ggcaaggtcctgatacattgatttgcttcaatccttttgtcgatccttaaggacatgatgat |
294 |
Q |
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| T |
25899447 |
gaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgcttcaatccttctgtcgat-cttaaggacatgatgat |
25899361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 37616781 - 37616721
Alignment:
| Q |
177 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaa |
237 |
Q |
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| T |
37616781 |
gcatactattttccctagattgtgtgattatggaaggttaaacttgaaatgagaatggcaa |
37616721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 40068615 - 40068753
Alignment:
| Q |
15 |
aaatacgacggctcatggcggaaaatgtggctcttatggccaaggttgcgatttgacggtaagcacagctatctcttatttcatagccttatttcctgct |
114 |
Q |
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| T |
40068615 |
aaatacgatggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgatggtaagcacagctatctcttatttcataaccttatttcctgct |
40068714 |
T |
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| Q |
115 |
cttcatattgattagtgacctgtgatggttaagtttttt |
153 |
Q |
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| T |
40068715 |
cctcatattgattggtgaccggtgatggttaagtttttt |
40068753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 29200018 - 29200132
Alignment:
| Q |
177 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaaggtcctgatacattgatttgcttcaatccttttgtcgat |
276 |
Q |
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| T |
29200018 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacctgaaatgagaatgacaaggtcctgatacattgattttcttcaatgcttctgtcgat |
29200117 |
T |
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| Q |
277 |
ccttaaggacatgatg |
292 |
Q |
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| T |
29200118 |
-cttaaggacatgatg |
29200132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 19768506 - 19768566
Alignment:
| Q |
177 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaa |
237 |
Q |
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| T |
19768506 |
gcatactattttccctagattgtttgattatggaaggttaaacttgaaatgagaatggcaa |
19768566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 8028252 - 8028212
Alignment:
| Q |
211 |
aggttaaacttgaaatgagaatggcaaggtcctgatacatt |
251 |
Q |
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| T |
8028252 |
aggttaaacctgaaaggagaatggcaaggtcctgatacatt |
8028212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 32663200 - 32663279
Alignment:
| Q |
181 |
actaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaaggtcctgatacattgatttgctt |
260 |
Q |
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|||| ||||||| ||||||||||| | | |||||||| | |||| ||||||||||| | |||||||||||| ||||||| |
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| T |
32663200 |
actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatggcaggttcctgatacattagtttgctt |
32663279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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