View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3703_low_4 (Length: 250)

Name: NF3703_low_4
Description: NF3703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3703_low_4
NF3703_low_4
[»] chr6 (11 HSPs)
chr6 (12-233)||(27589660-27589881)
chr6 (12-233)||(27674089-27674305)
chr6 (24-224)||(26805974-26806180)
chr6 (161-233)||(27682355-27682427)
chr6 (162-233)||(27703571-27703642)
chr6 (146-224)||(26638856-26638934)
chr6 (146-224)||(26744822-26744900)
chr6 (119-223)||(26888143-26888244)
chr6 (84-169)||(27424010-27424095)
chr6 (146-233)||(27607770-27607857)
chr6 (157-233)||(27657384-27657460)
[»] chr1 (1 HSPs)
chr1 (12-233)||(264841-265051)
[»] chr4 (6 HSPs)
chr4 (146-216)||(18652182-18652252)
chr4 (146-216)||(18720770-18720840)
chr4 (146-216)||(18676240-18676310)
chr4 (146-216)||(18686280-18686350)
chr4 (146-216)||(18696086-18696156)
chr4 (146-216)||(18728206-18728276)
[»] scaffold0003 (1 HSPs)
scaffold0003 (84-169)||(63268-63353)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 27589660 - 27589881
Alignment:
Q  12 aacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagattta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589660 aacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagattta 27589759  T
Q  112 tacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaatac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589760 tacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaatac 27589859  T
Q  212 cacattctcctcctccgtgttg 233  Q
    ||||||||||||||||||||||    
T  27589860 cacattctcctcctccgtgttg 27589881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 27674089 - 27674305
Alignment:
Q  12 aacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagattta 111  Q
    |||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27674089 aacctgtgattaattgagagaatct-----tggtgctctttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagattta 27674183  T
Q  112 tacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaatac 211  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27674184 tacggattgaaaatttatttcgtttccgtttcttttgtgacaatgaagcattgagatattcatttgattttgtctttctaatataaggatcgataaatac 27674283  T
Q  212 cacattctcctcctccgtgttg 233  Q
    ||||||||||||||||||||||    
T  27674284 cacattctcctcctccgtgttg 27674305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 26806180 - 26805974
Alignment:
Q  24 attgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagatttatacggattgaaa 123  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| || |||||||||||||| || |||||||||||||||||||||    
T  26806180 attgagagaatctagctccggtgctctttttgttttctgaacctagccctgaatttaagaagcacccaaatctttctccgaagatttatacggattgaaa 26806081  T
Q  124 atttatttcgtttccgtttcttttgtgata------atgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacatt 217  Q
    |||| |||||||||  ||||| ||||||||      |||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  26806080 atttctttcgtttcattttctcttgtgataatgataatgaagcattaagatattcatctgattttgtctttctaatataaggattggtgaataccacatt 26805981  T
Q  218 ctcctcc 224  Q
    |||||||    
T  26805980 ctcctcc 26805974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 27682427 - 27682355
Alignment:
Q  161 attgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctccgtgttg 233  Q
    |||||||||||||| ||||||||||||| ||||| ||||||   | |||||||||||||||||||||||||||    
T  27682427 attgagatattcatctgattttgtctttgtaatacaaggatctgtgaataccacattctcctcctccgtgttg 27682355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 27703571 - 27703642
Alignment:
Q  162 ttgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctccgtgttg 233  Q
    ||||||||||||| | ||||  |||||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  27703571 ttgagatattcatctaatttcatctttcgaatataaggatcgatgaataccacattctcctcctccgtgttg 27703642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 26638934 - 26638856
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcc 224  Q
    |||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||| | |||| ||||| |||||||    
T  26638934 ttgtgataatgaagcattcagatattcatctaattttctctttctattataaggattggtgaatatcacatcctcctcc 26638856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 26744900 - 26744822
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcc 224  Q
    |||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||| | |||| ||||| |||||||    
T  26744900 ttgtgataatgaagcattcagatattcatctaattttctctttctattataaggattggtgaatatcacatcctcctcc 26744822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 26888244 - 26888143
Alignment:
Q  119 tgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattc 218  Q
    ||||||||| |||||||||| ||| |||| ||||||||||| |||||||||||||| |||||||| || ||   |||| |||||| | |||| |||||||    
T  26888244 tgaaaatttctttcgtttccttttattttctgataatgaagtattgagatattcatctgattttgactctc---tatatggattggtgaatatcacattc 26888148  T
Q  219 tcctc 223  Q
    |||||    
T  26888147 tcctc 26888143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 27424010 - 27424095
Alignment:
Q  84 tgcacccaaatctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagata 169  Q
    |||||||| |||||| |||||| ||  ||| ||||||||||||| ||| |||||| |||||||| ||||||||| |||||||||||    
T  27424010 tgcacccacatctttctctgaaaatccataaggattgaaaatttgttttgtttccttttcttttctgataatgatgcattgagata 27424095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 27607770 - 27607857
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctccgtgttg 233  Q
    |||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||||   | ||||||||||||| |||||| ||||||    
T  27607770 ttgtaataacgaagcattgcgatgttcatctgattttctctttctaatataaggatcagtgaataccacattcttctcctctgtgttg 27607857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 27657384 - 27657460
Alignment:
Q  157 aagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctccgtgttg 233  Q
    |||||||||||||||  | | ||||| ||||||||||||||||||   | |||||||||| |||||| ||| |||||    
T  27657384 aagcattgagatatttttctaattttatctttctaatataaggatcagtgaataccacatcctcctcatccatgttg 27657460  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 264841 - 265051
Alignment:
Q  12 aacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagattta 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||                  || ||||| | ||||||||||    
T  264841 aacctgcgattaattgagagaatctagctccggtgctccttttgttttctgaatctagccc------------------aagtctttctttgaagattta 264922  T
Q  112 tacggattgaaaatttatttcgtttccgtttcttttgtgat------aatgaagcattgagatattcatttgattttgtcttt-ctaatataaggattga 204  Q
    || ||||||||||||| |||||||||  |||||||| ||||      |||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  264923 taaggattgaaaatttctttcgtttcattttcttttctgataatgataatgaagcattgagatattcatttgattttgtctttactaatataaggattgg 265022  T
Q  205 taaataccacattctcctcctccgtgttg 233  Q
    | ||||  ||||| ||||||||| |||||    
T  265023 tgaatataacattatcctcctccctgttg 265051  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 18652182 - 18652252
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 216  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||| || |||| |||||    
T  18652182 ttgtgataatgaagcattgagatattcatctaattttctctttctactataaggattaatgaatatcacat 18652252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 18720770 - 18720840
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 216  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||| | |||| |||||    
T  18720770 ttgtgataatgaagcattgagatattcatctaattttctctttctactataaggattggtgaatatcacat 18720840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 18676240 - 18676310
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 216  Q
    ||||||||||||||||||||||||||||| |  |||| |||||||| ||||||||||| | |||| |||||    
T  18676240 ttgtgataatgaagcattgagatattcatctatttttctctttctactataaggattggtgaatatcacat 18676310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 18686280 - 18686350
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 216  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| |||||| |||| | |||| |||||    
T  18686280 ttgtgataatgaagcattgagatattcatctaattttctctttctactataagaattggtgaatatcacat 18686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 18696086 - 18696156
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 216  Q
    ||||||||||||||||||||||||||||| | ||| | |||||||| ||||||||||| | |||| |||||    
T  18696086 ttgtgataatgaagcattgagatattcatctaattctctctttctactataaggattggtgaatatcacat 18696156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 18728206 - 18728276
Alignment:
Q  146 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 216  Q
    ||||||||||||||||||||||||||||| | ||||| ||| |||| ||||||||||| | |||| |||||    
T  18728206 ttgtgataatgaagcattgagatattcatctaattttctctatctactataaggattggtgaatatcacat 18728276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 63353 - 63268
Alignment:
Q  84 tgcacccaaatctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagata 169  Q
    |||||||| |||||| |||||| ||  ||| ||||||||||||| ||| |||||| |||||||| ||||||||| |||||||||||    
T  63353 tgcacccacatctttctctgaaaatccataaggattgaaaatttgttttgtttccttttcttttctgataatgatgcattgagata 63268  T

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