View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3703_low_9 (Length: 211)
Name: NF3703_low_9
Description: NF3703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3703_low_9 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 34164720 - 34164538
Alignment:
| Q |
16 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
115 |
Q |
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| T |
34164720 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
34164621 |
T |
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| Q |
116 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatctattaataaaaataaaaagtattatt |
198 |
Q |
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| T |
34164620 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatctattaataaaaataaaaagtattatt |
34164538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 34171217 - 34171035
Alignment:
| Q |
16 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
115 |
Q |
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| T |
34171217 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
34171118 |
T |
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| Q |
116 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatctattaataaaaataaaaagtattatt |
198 |
Q |
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| T |
34171117 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatntattaataaaaataaaaagtattatt |
34171035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 34214815 - 34214633
Alignment:
| Q |
16 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34214815 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
34214716 |
T |
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| Q |
116 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatctattaataaaaataaaaagtattatt |
198 |
Q |
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| T |
34214715 |
ggtgcgttatcgaacttggtatgatcggaaaatatgtccttagaatctgtataaatctattaataaaaataaaaagtattatt |
34214633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 31541 - 31359
Alignment:
| Q |
16 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31541 |
tatatttattgtagaaattaataaaacttgagaaaattcacctatcaagaaatttttatttctataaagaattattaatcaaacctttggaccggatctt |
31442 |
T |
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| Q |
116 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatctattaataaaaataaaaagtattatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31441 |
ggtgcgttatcgaacttggtataatcggaaaacatgtccttagaatctgtataaatntattaataaaaataaaaagtattatt |
31359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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