View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3704-Insertion-7 (Length: 479)
Name: NF3704-Insertion-7
Description: NF3704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704-Insertion-7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 31637695 - 31637965
Alignment:
| Q |
8 |
ttacagagtttgtttttgggctttttcattgaagttcaagttttgtaacatgggcttggcccgtgttttataactaattacttgggatgctattatcacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31637695 |
ttacagagtttgtttttgggctttttcattgaagttcaagttttgtaacatgggcttggcccatgttttataactaattacttggaatgctattatcacc |
31637794 |
T |
|
| Q |
108 |
accaactacttattctctatatacgtaaaagactgcaaagacatttgattaaatgtgttagtgatcgatttcaattagtttg-nnnnnnnnnntcattta |
206 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
31637795 |
accaactacttgttctctatgtacgtaaaagactgcaaagacatttgattaaatgtgttagtgatcgatttcaattagtttgaaacaaaaaaattatttg |
31637894 |
T |
|
| Q |
207 |
atacaaagattgaaaatagatgatttggttagtttggatgactcgttttaaagaatatgatataatctgac |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31637895 |
atacaaagattgaaaatagatgatttggttagtttggatgactcgttttaaagaatatgatataatttgac |
31637965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 31638029 - 31638069
Alignment:
| Q |
341 |
ctactaatattacaaggaaaaaattctcttgaaacttgtgt |
381 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31638029 |
ctactaatattaaaaggaaaaaattctcttgaaacttgtgt |
31638069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University