View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704R-Insertion-3 (Length: 860)

Name: NF3704R-Insertion-3
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704R-Insertion-3
NF3704R-Insertion-3
[»] chr8 (10 HSPs)
chr8 (372-860)||(26738398-26738886)
chr8 (8-90)||(26737878-26737960)
chr8 (265-325)||(26738291-26738351)
chr8 (489-566)||(32615827-32615904)
chr8 (489-566)||(29912130-29912207)
chr8 (497-561)||(13521757-13521821)
chr8 (497-561)||(13611292-13611356)
chr8 (497-560)||(41909445-41909508)
chr8 (92-197)||(26738117-26738218)
chr8 (497-526)||(38813753-38813782)
[»] chr2 (1 HSPs)
chr2 (488-566)||(11074544-11074622)
[»] chr4 (3 HSPs)
chr4 (493-566)||(11123454-11123527)
chr4 (488-566)||(26009721-26009799)
chr4 (488-561)||(54639724-54639797)
[»] chr1 (5 HSPs)
chr1 (488-566)||(44698022-44698100)
chr1 (488-561)||(44529253-44529326)
chr1 (488-526)||(10474425-10474463)
chr1 (497-566)||(31963042-31963111)
chr1 (489-526)||(47235509-47235546)
[»] chr6 (2 HSPs)
chr6 (569-691)||(8591626-8591745)
chr6 (488-561)||(30326670-30326743)
[»] chr7 (1 HSPs)
chr7 (488-561)||(6707634-6707707)
[»] chr3 (1 HSPs)
chr3 (488-526)||(31732116-31732154)
[»] scaffold0074 (1 HSPs)
scaffold0074 (497-566)||(29743-29812)


Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 372 - 860
Target Start/End: Original strand, 26738398 - 26738886
Alignment:
Q  372 atagaggcactactcttttgattcgtctagggcatcgaaatttaaaaggccggcccctaagtgcacttgttaagtattnnnnnnn--tgaaaacaagtgg 469  Q
    ||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||| ||         |||||||||||||    
T  26738398 atagaggcactactcttttgattcgcccagggcatctaaatttaaaaggccggcctctaagtgcacttgttaagttttaaaaaaaaatgaaaacaagtgg 26738497  T
Q  470 ataattttcatttaaaagaaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaagaca 569  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26738498 ataattttcatataaaa-aaaagttgatttttaatgtttcaatatgttgaatacacatatttcaggataaaatttctactttaaacttcttagcaagaca 26738596  T
Q  570 attagcataggaagttatgagcttgagaggaggatcaacggagggagtttagtgatctattgaattctatattgttttgcaggatgatgtaaataataga 669  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26738597 attagcgtaggaagttatgagcttgagaggaggatcaacggagggagtttagtgatctattgaattctatattgttttgcaggatgatgtaaataatagg 26738696  T
Q  670 tggctgtggagtttacatacttnnnnnnnnntatacagtcaatagtgcttacaatttatcaacaaaccaacaacacactacaaatgataataatgatttt 769  Q
    ||||||||||||||||||||||         |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26738697 tggctgtggagtttacatactt-aaaaaaaatatacagtcaatggtgcttacaatttatcaacaaaccaacaacagactacaaatgataataatgatttt 26738795  T
Q  770 ttggcattgtggttctcctttgaaagttaacatttttgtgtgatgtcttcttcgaaagtgtcttctaacaaaagacaatttaagctagagg 860  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26738796 ctggccttgtggttctcctttgaaagttaacatttttgtgtgatgtcttcttcgaaagtgtcttctaacaaaagacaatttaagcaagagg 26738886  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 26737878 - 26737960
Alignment:
Q  8 aatatatatcctttgtctgccaaaagcatgcgtgtcgtgcgtgtatacannnnnnnnagaggttatactcacaaatataaata 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  26737878 aatatatatcctttgtctgccaaaagcatgcgtgtcgtgcgtgtatacattttttttagaggttatactcacaaatataaata 26737960  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 26738291 - 26738351
Alignment:
Q  265 attgatatatgtttcatagtcactacagattcatttccactaaatgaaatgtatcatagtc 325  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26738291 attgatatatgtttcatagtcactaaagattcatttccactaaatgaaatgtatgatagtc 26738351  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 489 - 566
Target Start/End: Complemental strand, 32615904 - 32615827
Alignment:
Q  489 aaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    ||||||| |||||||||||||||| ||||||||||||  | | || ||||||||||||||||||||||||||| ||||    
T  32615904 aaagttgttttttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaacttcttatcaag 32615827  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 566
Target Start/End: Complemental strand, 29912207 - 29912130
Alignment:
Q  489 aaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    ||||||| ||||| ||||||||||  |||||||||||| | || | ||||||||||||||||||||||||||| ||||    
T  29912207 aaagttgctttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttatcaag 29912130  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 497 - 561
Target Start/End: Original strand, 13521757 - 13521821
Alignment:
Q  497 tttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttctta 561  Q
    |||||||||||||||| ||| ||||||||| | ||||  ||||||||||||||||||||||||||    
T  13521757 tttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttctta 13521821  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 497 - 561
Target Start/End: Original strand, 13611292 - 13611356
Alignment:
Q  497 tttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttctta 561  Q
    |||||||||||||||| ||| ||||||||| | ||||  ||||||||||||||||||||||||||    
T  13611292 tttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttctta 13611356  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 41909445 - 41909508
Alignment:
Q  497 tttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttctt 560  Q
    |||||||| ||||||||||||||||||||| | |||| |||||| |||  ||||||||||||||    
T  41909445 tttttaatatttcaatatgttgaatacacagatttcaagataaatttttcactttaaacttctt 41909508  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 26738117 - 26738218
Alignment:
Q  92 aaatagagtagccaatgttcaaaccctaatcacgctatccggccaaataatgtccacattannnnnnnnnaccatttgagctatgattgtggatttgtta 191  Q
    |||||||| |||| |||||||||||||||||||  | | |||||||||||| |||| |||          ||||||||||||||||||||||| ||||||    
T  26738117 aaatagaggagccgatgttcaaaccctaatcacattgttcggccaaataatttccatatt----ttttttaccatttgagctatgattgtggacttgtta 26738212  T
Q  192 gtatgc 197  Q
    ||||||    
T  26738213 gtatgc 26738218  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 526
Target Start/End: Complemental strand, 38813782 - 38813753
Alignment:
Q  497 tttttaatgtttcaatatgttgaatacaca 526  Q
    ||||||||||||||||||||||||||||||    
T  38813782 tttttaatgtttcaatatgttgaatacaca 38813753  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 11074544 - 11074622
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    |||||||| ||||| |||||||||| ||||||||||||| |   || || |||||||||||||||||||||||| ||||    
T  11074544 aaaagttgcttttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaacttcttatcaag 11074622  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 11123527 - 11123454
Alignment:
Q  493 ttgatttttaatgtttcaatatgttgaatacacataattc-aggataaaatttctactttaaacttcttagcaag 566  Q
    ||||||||| |||||| ||||||||||||||||| ||||| | ||||||||||  ||||||||||||||| ||||    
T  11123527 ttgatttttgatgttttaatatgttgaatacaca-aattctatgataaaattttcactttaaacttcttatcaag 11123454  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 26009721 - 26009799
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    |||||||| |||||||| ||||||||| ||||||||||| | | || |||||| ||| ||||||||| |||||| ||||    
T  26009721 aaaagttgctttttaatatttcaatattttgaatacacaaattccaagataaagtttttactttaaatttcttatcaag 26009799  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 561
Target Start/End: Original strand, 54639724 - 54639797
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttctta 561  Q
    |||||||| ||||| |||||||||| |||| |||||||| |   ||  ||||||||||||||||||||||||||    
T  54639724 aaaagttgctttttgatgtttcaatttgttcaatacacaaatcccaaaataaaatttctactttaaacttctta 54639797  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 566
Target Start/End: Complemental strand, 44698100 - 44698022
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    |||||||  ||||||||||||||||||||||||||||||   | || ||||||| ||| ||||||||||| ||| ||||    
T  44698100 aaaagttactttttaatgtttcaatatgttgaatacacaacttccaagataaaacttccactttaaacttattatcaag 44698022  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 561
Target Start/End: Complemental strand, 44529326 - 44529253
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttctta 561  Q
    |||||||  |||||||||||| |||||||||||||||||   || | ||||||| ||| |||||||||||||||    
T  44529326 aaaagttactttttaatgttttaatatgttgaatacacaacttttaagataaaacttccactttaaacttctta 44529253  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 10474425 - 10474463
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacaca 526  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  10474425 aaaatttgatttttaaagtttcaatatgttgaatacaca 10474463  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 31963042 - 31963111
Alignment:
Q  497 tttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    |||||||||||||||| ||||||||||||| | | ||  | |||||||| | ||||||||||||| ||||    
T  31963042 tttttaatgtttcaatgtgttgaatacacaaattccaaaacaaaatttccattttaaacttcttatcaag 31963111  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 526
Target Start/End: Complemental strand, 47235546 - 47235509
Alignment:
Q  489 aaagttgatttttaatgtttcaatatgttgaatacaca 526  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  47235546 aaagttgctttttaatgtttcaatttgttgaatacaca 47235509  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 691
Target Start/End: Complemental strand, 8591745 - 8591626
Alignment:
Q  569 aattagcataggaagttatgagcttgagaggaggatcaacggagggagtttagtgatctattgaattctatattgttttgcaggatgatgtaaataatag 668  Q
    ||||||| ||||| ||||| |||||| |||||||||||||  ||||| | ||||| ||  ||||||||||   | ||||||| |||||||| ||| | |     
T  8591745 aattagcgtaggaggttatcagcttgggaggaggatcaactaagggattgtagtgctccgttgaattcta---ttttttgcaagatgatgttaatgacat 8591649  T
Q  669 atggctgtggagtttacatactt 691  Q
     ||| ||||||||||||||||||    
T  8591648 gtgggtgtggagtttacatactt 8591626  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 561
Target Start/End: Complemental strand, 30326743 - 30326670
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttctta 561  Q
    |||||||| | ||| |||||||||| ||||||||||||| |   || ||||||||||| | |||||||||||||    
T  30326743 aaaagttgttctttgatgtttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttctta 30326670  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 561
Target Start/End: Original strand, 6707634 - 6707707
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacacata-attcaggataaaatttctactttaaacttctta 561  Q
    |||||||  |||||||||||| ||| ||||||||||| | | ||| ||| |||||||||||||||||||||||||    
T  6707634 aaaagttattttttaatgttttaatgtgttgaatacataaatattaagg-taaaatttctactttaaacttctta 6707707  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 31732116 - 31732154
Alignment:
Q  488 aaaagttgatttttaatgtttcaatatgttgaatacaca 526  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  31732116 aaaagttgctttttgatgtttcaatatgttgaatacaca 31732154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 29743 - 29812
Alignment:
Q  497 tttttaatgtttcaatatgttgaatacacataattcaggataaaatttctactttaaacttcttagcaag 566  Q
    |||| ||||||||||| ||||||||||||  | | || ||||||||||||||||| ||||| ||| ||||    
T  29743 ttttcaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttcaactttttatcaag 29812  T

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