View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704R-Insertion-4 (Length: 843)
Name: NF3704R-Insertion-4
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704R-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 803; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 9 - 843
Target Start/End: Original strand, 35742359 - 35743193
Alignment:
| Q |
9 |
agtctaactgtgttttattaatagtaaaaatggtcgaaaatcgaaagtagatttgtagttttaatttgttctaactaactgtgataccttaagtactaac |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742359 |
agtctaactgtgttttattaatagtaaaaatggtcgaaaatcgaaagtagttttgtagttttaatttgttctaactaactgtgataccttaagtactaac |
35742458 |
T |
|
| Q |
109 |
tccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagtcgaattcaatgttgtgactcttaaacttcttagactcat |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35742459 |
tccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagttgaattcaatgttgtgactcttaaacttcttagactcat |
35742558 |
T |
|
| Q |
209 |
catctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgttggtgcacttcggtggttagaatgttagaaataattgactgcattaggac |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742559 |
catctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgttgttgcacttcggtggttagaatgttagaaataattgactgcattaggac |
35742658 |
T |
|
| Q |
309 |
acaaatataagtacatataaatgatgatgttggattaccttgctgaaataacgttcaaccttgtccagaagctgacccataggagccactaccttccaat |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742659 |
acaaatataagtacatataaatgatgatgttggattaccttgctgaaataacgttcaaccttgtccagaagctgacccataggagccactaccttccaat |
35742758 |
T |
|
| Q |
409 |
tttgaagttcagtgaggattgaatcaagcttattgtacaatgatgccgccattctaatagcttccaacttctttgtagggaagccttcgaatcgtgatag |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35742759 |
tttgaagttcagtgaggattgaatcaagcttattgtacaatgatgctgccattctaatagcttccaacttctttgtagggaagccttcgaatcgcgatag |
35742858 |
T |
|
| Q |
509 |
cacctatacagaaacagaattgtataaattagttggtgaatgaaacaataactaatggaaatataaacctaatggacatgagttttgctaacttacctgt |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742859 |
cacctatacagaaacagaattgtataaattagttggtgaatgaaacaataactagtggaaatataaacctaatggacatgagttttgctaacttacctgt |
35742958 |
T |
|
| Q |
609 |
gattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttaaaattagtaattcttgatctca |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35742959 |
gattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttgaaattagtaattcttgatctca |
35743058 |
T |
|
| Q |
709 |
gttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaatgtgggaaaagaaaaacattacgaaatgag |
808 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743059 |
gttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaatgtgggaaaagaaaaacattacgaaatgag |
35743158 |
T |
|
| Q |
809 |
acattggttctatgacttgcacatcaagttaacaa |
843 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |
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| T |
35743159 |
acattggttctatgacttgcatatcaagttaacaa |
35743193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 609 - 778
Target Start/End: Original strand, 11917215 - 11917384
Alignment:
| Q |
609 |
gattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttaaaattagtaattcttgatctca |
708 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||| ||||| ||||||| |
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| T |
11917215 |
gattcatcagttagtttctcaagaacagattcaacatctttgtggaacttgatcaattctgtcatttcctttgtcttgaaattggtaatggaagatctca |
11917314 |
T |
|
| Q |
709 |
gttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaa |
778 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
11917315 |
attctatgatgtgttttgtgtacttttgaacatcttcttctatttgttgaaagtaagatgatctagtaaa |
11917384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 598 - 778
Target Start/End: Complemental strand, 3424199 - 3424019
Alignment:
| Q |
598 |
aacttacctgtgattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttaaaattagtaat |
697 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||| || ||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| ||||| ||||| |
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| T |
3424199 |
aactaacctgagattcatcagttagtttctcaaaaacagattcaacttctttgtggaacttgatcaattctgtcatttcctttgtcttgaaattggtaat |
3424100 |
T |
|
| Q |
698 |
tcttgatctcagttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaa |
778 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
3424099 |
agaagatctcaattctatgatgtgttttgtgtacttttgaacatcttcttctatttgttgaaagtaagatgatctagtaaa |
3424019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 3424689 - 3424532
Alignment:
| Q |
94 |
accttaagtactaactccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagtcgaattcaatgttgtgactcttaa |
193 |
Q |
| |
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||||| ||| |||||||||||||||| || |||||||||||||||||||| || || || | | || | |||||||||||| ||||| || | ||||| |
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| T |
3424689 |
acctttagtgctaactccatgcaatttgaagaaacatccaccattgcttctttaattttgacaaggatgtagaagtcgaattcgatgttatggcccttaa |
3424590 |
T |
|
| Q |
194 |
acttcttagactcatcatctttggttcgttccaaagcatctaaatcggttttaatctg |
251 |
Q |
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| ||||| | || |||||||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
3424589 |
atttcttcaattcttcatctttcgttcgctccaaagcatctaattctgttttgatctg |
3424532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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