View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704R-Insertion-5 (Length: 657)
Name: NF3704R-Insertion-5
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704R-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 256 - 657
Target Start/End: Complemental strand, 34377775 - 34377373
Alignment:
| Q |
256 |
aacggtgtgtttcataaaagaagttgattggataaaaaa-tttgatgtgtgatagtgtactaagaaggaaaaagttataataattcatacctcacaccaa |
354 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
34377775 |
aacggtgtgtttcataaaagaagttgcttggataaaaaaatttgatgtgtgatagtgtactaagaaggagaaagttgtaataattcatacctcacaccaa |
34377676 |
T |
|
| Q |
355 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctct-tcaagacctggagtg |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | || |||||||||| |
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| T |
34377675 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaat-tctataaatacctggagtg |
34377577 |
T |
|
| Q |
454 |
tataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagcttt |
553 |
Q |
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|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||| |||||| |
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| T |
34377576 |
tacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagcttt |
34377477 |
T |
|
| Q |
554 |
cactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
653 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377476 |
cactgaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
34377377 |
T |
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| Q |
654 |
ctcc |
657 |
Q |
| |
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|||| |
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|
| T |
34377376 |
ctcc |
34377373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 327 - 657
Target Start/End: Original strand, 34549677 - 34550007
Alignment:
| Q |
327 |
agttataataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttct |
426 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34549677 |
agttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttct |
34549776 |
T |
|
| Q |
427 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggca |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
34549777 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggca |
34549876 |
T |
|
| Q |
527 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagcttt |
626 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||| |
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| T |
34549877 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagcttt |
34549976 |
T |
|
| Q |
627 |
ctgttgtaaacaattattcccaatgatctcc |
657 |
Q |
| |
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||||||| |||||||||||| |||||||||| |
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| T |
34549977 |
ctgttgtgaacaattattcctaatgatctcc |
34550007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 34378024 - 34377810
Alignment:
| Q |
9 |
aaaattccttcaaatagaacttgtattatgagatacgtagcttgtttagatgcataatatttcttaattatgggtgattgatttgtggaagtaatttgat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34378024 |
aaaattccttcaaatagaacttgtattatgagatacgtagcttgtttagatgcataatatttcttaattatgggtgattgatttgtggaagtaatttgat |
34377925 |
T |
|
| Q |
109 |
gatttgaagaagaagnnnnnnnnncagggaaatacgaggaacagagagtgacgtagaatgggaagggaaaatgaatgaaggaaataatgtgtagctagct |
208 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377924 |
gatttgaagaagaag--aaaaaaacagggaaatatgaggaacagagagtgacgtagaatgggaagggaaaatgaatgaaggaaataatgtgtagctagct |
34377827 |
T |
|
| Q |
209 |
tctagacagtgctgttg |
225 |
Q |
| |
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||||||||||||||||| |
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| T |
34377826 |
tctagacagtgctgttg |
34377810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 341 - 640
Target Start/End: Complemental strand, 135193 - 134895
Alignment:
| Q |
341 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttc |
440 |
Q |
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|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| || | |||| || | |
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| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
|
| Q |
441 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaa |
540 |
Q |
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||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||| | |||| ||| | ||||| ||||||||||| ||||||| |
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| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaa |
134995 |
T |
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| Q |
541 |
gggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaat |
640 |
Q |
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|||||| |||||| || |||||||||||||||||||||||||| ||| || ||| | | || ||||||||||| |||||||||||||||| ||||| |
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| T |
134994 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaat |
134895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 6111151 - 6111193
Alignment:
| Q |
152 |
gagagtgacgtagaatgggaagggaaaatgaatgaaggaaata |
194 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6111151 |
gagagtgaagtagaatgggaagggaaaatgaatgaaggaaata |
6111193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 21448309 - 21448244
Alignment:
| Q |
46 |
tagcttgtttagatgcataatatttcttaattatgggtgattgatttgtggaagtaatttgatgatttga |
115 |
Q |
| |
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||||||| |||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
21448309 |
tagcttgcttagatcaataatatttctta----tgggtaattgatttgtggaagtagattgatgatttga |
21448244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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