View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704R-Insertion-6 (Length: 608)

Name: NF3704R-Insertion-6
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704R-Insertion-6
NF3704R-Insertion-6
[»] chr7 (35 HSPs)
chr7 (9-608)||(21160821-21161456)
chr7 (80-298)||(29373351-29373567)
chr7 (84-230)||(9135335-9135479)
chr7 (80-223)||(26762881-26763022)
chr7 (80-234)||(5863156-5863308)
chr7 (120-223)||(7486525-7486628)
chr7 (118-231)||(9867945-9868058)
chr7 (125-234)||(13292136-13292245)
chr7 (125-233)||(16987105-16987213)
chr7 (90-234)||(12644754-12644897)
chr7 (120-234)||(39879356-39879470)
chr7 (163-222)||(5925526-5925585)
chr7 (173-234)||(2226612-2226673)
chr7 (125-222)||(10287609-10287706)
chr7 (80-199)||(43172006-43172114)
chr7 (178-229)||(26562891-26562942)
chr7 (83-231)||(9573400-9573545)
chr7 (125-226)||(34854220-34854321)
chr7 (9-157)||(16203768-16203918)
chr7 (168-213)||(27803358-27803403)
chr7 (163-223)||(18773961-18774021)
chr7 (163-221)||(1979044-1979102)
chr7 (81-187)||(12004751-12004854)
chr7 (176-230)||(12163751-12163805)
chr7 (125-201)||(5929024-5929100)
chr7 (9-53)||(16204443-16204487)
chr7 (170-213)||(4229848-4229891)
chr7 (138-232)||(13159344-13159439)
chr7 (172-234)||(33799934-33799997)
chr7 (83-151)||(16204343-16204409)
chr7 (265-298)||(43172951-43172984)
chr7 (163-223)||(4781550-4781610)
chr7 (163-223)||(4813981-4814041)
chr7 (163-223)||(17149942-17150001)
chr7 (170-234)||(25173869-25173933)
[»] chr2 (32 HSPs)
chr2 (9-284)||(45258047-45258324)
chr2 (89-296)||(12127642-12127847)
chr2 (80-298)||(12168878-12169094)
chr2 (84-234)||(36267467-36267615)
chr2 (80-232)||(3586334-3586484)
chr2 (90-234)||(45714964-45715106)
chr2 (80-296)||(19919036-19919250)
chr2 (118-228)||(20120322-20120432)
chr2 (89-215)||(24499777-24499901)
chr2 (84-294)||(27846493-27846701)
chr2 (127-231)||(15825126-15825230)
chr2 (80-234)||(29710987-29711137)
chr2 (124-230)||(10923177-10923283)
chr2 (125-219)||(18770296-18770392)
chr2 (125-234)||(19050448-19050557)
chr2 (125-234)||(29137870-29137979)
chr2 (84-216)||(18772239-18772365)
chr2 (125-232)||(18135842-18135949)
chr2 (169-234)||(17671942-17672007)
chr2 (122-230)||(24755441-24755549)
chr2 (80-234)||(15390555-15390707)
chr2 (138-232)||(30638534-30638628)
chr2 (169-234)||(17626870-17626935)
chr2 (168-209)||(26713591-26713632)
chr2 (163-219)||(24157357-24157413)
chr2 (163-223)||(24318893-24318953)
chr2 (168-223)||(28426178-28426233)
chr2 (169-222)||(17560744-17560797)
chr2 (169-221)||(12634828-12634880)
chr2 (213-285)||(18134269-18134341)
chr2 (168-217)||(36022447-36022496)
chr2 (175-228)||(40800099-40800152)
[»] chr4 (25 HSPs)
chr4 (74-291)||(19809614-19809828)
chr4 (80-234)||(12683754-12683906)
chr4 (80-231)||(47253249-47253398)
chr4 (117-297)||(10981772-10981951)
chr4 (125-229)||(15514574-15514678)
chr4 (81-232)||(19643673-19643822)
chr4 (125-234)||(15742166-15742275)
chr4 (118-302)||(19818595-19818778)
chr4 (80-223)||(29157082-29157223)
chr4 (172-284)||(3981869-3981981)
chr4 (80-230)||(5518513-5518661)
chr4 (126-217)||(14602029-14602120)
chr4 (118-223)||(2674580-2674681)
chr4 (121-232)||(14003073-14003184)
chr4 (163-217)||(13171065-13171119)
chr4 (163-223)||(17110678-17110738)
chr4 (163-229)||(16012522-16012588)
chr4 (163-220)||(1638369-1638425)
chr4 (163-202)||(12415437-12415476)
chr4 (169-220)||(19563945-19563996)
chr4 (171-233)||(19473610-19473672)
chr4 (206-284)||(40979154-40979232)
chr4 (81-114)||(50151775-50151808)
chr4 (168-200)||(23609796-23609828)
chr4 (172-228)||(35043188-35043244)
[»] chr5 (28 HSPs)
chr5 (24-298)||(27083148-27083423)
chr5 (89-296)||(22903000-22903205)
chr5 (80-212)||(26994576-26994706)
chr5 (84-284)||(8938829-8939028)
chr5 (74-285)||(20025201-20025410)
chr5 (80-231)||(25537377-25537526)
chr5 (100-228)||(25333710-25333836)
chr5 (163-223)||(26348130-26348190)
chr5 (163-232)||(24546318-24546386)
chr5 (90-219)||(32418466-32418593)
chr5 (81-229)||(22865735-22865881)
chr5 (174-234)||(16621177-16621237)
chr5 (168-234)||(4477167-4477233)
chr5 (89-234)||(34493489-34493625)
chr5 (173-234)||(227739-227800)
chr5 (125-230)||(25829001-25829106)
chr5 (163-223)||(18799760-18799820)
chr5 (147-219)||(19846053-19846125)
chr5 (147-219)||(26163619-26163691)
chr5 (129-232)||(19993182-19993285)
chr5 (163-234)||(31202479-31202550)
chr5 (168-234)||(7449761-7449827)
chr5 (163-221)||(18803900-18803958)
chr5 (80-189)||(24647302-24647409)
chr5 (170-213)||(18884508-18884551)
chr5 (9-66)||(19990966-19991023)
chr5 (21-57)||(8939059-8939095)
chr5 (180-220)||(30827053-30827093)
[»] chr1 (31 HSPs)
chr1 (80-234)||(26977709-26977861)
chr1 (24-234)||(16030364-16030575)
chr1 (25-285)||(5671688-5671950)
chr1 (83-234)||(16050363-16050512)
chr1 (117-296)||(5459714-5459892)
chr1 (83-231)||(34273059-34273205)
chr1 (118-225)||(12177364-12177471)
chr1 (119-234)||(22414744-22414859)
chr1 (124-234)||(33101519-33101629)
chr1 (89-234)||(2140927-2141066)
chr1 (89-271)||(18246075-18246254)
chr1 (100-234)||(52565549-52565681)
chr1 (165-230)||(4601540-4601605)
chr1 (125-222)||(1659802-1659899)
chr1 (133-234)||(14255051-14255152)
chr1 (125-234)||(23728833-23728941)
chr1 (125-233)||(25408066-25408174)
chr1 (123-219)||(23280273-23280367)
chr1 (117-234)||(43344449-43344564)
chr1 (163-223)||(21098896-21098956)
chr1 (163-234)||(48637519-48637591)
chr1 (168-234)||(8018918-8018984)
chr1 (129-234)||(16299591-16299695)
chr1 (163-234)||(21682641-21682712)
chr1 (153-219)||(16522759-16522825)
chr1 (163-231)||(2612714-2612782)
chr1 (163-219)||(3590811-3590867)
chr1 (168-222)||(46016096-46016149)
chr1 (171-219)||(30732501-30732549)
chr1 (80-158)||(12032223-12032298)
chr1 (244-298)||(16050278-16050332)
[»] chr8 (29 HSPs)
chr8 (81-233)||(30477611-30477761)
chr8 (82-231)||(18322915-18323062)
chr8 (118-233)||(24507427-24507542)
chr8 (9-143)||(23497059-23497194)
chr8 (138-288)||(23269161-23269311)
chr8 (82-231)||(13754730-13754877)
chr8 (80-233)||(3459454-3459604)
chr8 (80-214)||(17698255-17698387)
chr8 (74-231)||(13764961-13765116)
chr8 (80-296)||(26916868-26917082)
chr8 (89-296)||(15057943-15058147)
chr8 (90-232)||(21416709-21416849)
chr8 (89-297)||(17927683-17927889)
chr8 (118-196)||(6928096-6928174)
chr8 (80-204)||(5859814-5859936)
chr8 (127-220)||(24576598-24576691)
chr8 (119-189)||(24070866-24070936)
chr8 (163-223)||(14666890-14666950)
chr8 (179-234)||(20055548-20055603)
chr8 (178-281)||(23497201-23497304)
chr8 (163-234)||(24677638-24677709)
chr8 (165-223)||(4565446-4565504)
chr8 (175-235)||(11776298-11776358)
chr8 (165-231)||(1909761-1909827)
chr8 (169-216)||(8490046-8490093)
chr8 (118-148)||(7220617-7220647)
chr8 (188-234)||(17319698-17319744)
chr8 (9-66)||(6927989-6928045)
chr8 (169-230)||(22454290-22454351)
[»] chr6 (43 HSPs)
chr6 (80-296)||(30680899-30681113)
chr6 (80-233)||(19305434-19305585)
chr6 (83-234)||(18147275-18147424)
chr6 (82-231)||(20148289-20148434)
chr6 (82-231)||(22184394-22184539)
chr6 (80-212)||(34572964-34573094)
chr6 (125-234)||(12449596-12449705)
chr6 (130-230)||(34187272-34187372)
chr6 (81-231)||(31295506-31295654)
chr6 (24-234)||(3404772-3404984)
chr6 (127-231)||(19331695-19331799)
chr6 (80-223)||(33596841-33596982)
chr6 (122-213)||(689867-689958)
chr6 (119-230)||(22572018-22572128)
chr6 (74-231)||(9291984-9292138)
chr6 (80-233)||(34064165-34064316)
chr6 (89-231)||(9277280-9277419)
chr6 (163-234)||(16343548-16343619)
chr6 (163-234)||(22497349-22497420)
chr6 (118-232)||(11087473-11087587)
chr6 (83-211)||(15480314-15480440)
chr6 (82-194)||(14268440-14268551)
chr6 (119-221)||(14080466-14080567)
chr6 (119-220)||(25008398-25008498)
chr6 (95-201)||(4251029-4251133)
chr6 (40-157)||(12203568-12203683)
chr6 (80-221)||(27860918-27861057)
chr6 (168-234)||(15104323-15104385)
chr6 (89-231)||(2907878-2908017)
chr6 (125-232)||(19730604-19730710)
chr6 (126-220)||(12424328-12424422)
chr6 (125-202)||(9403173-9403250)
chr6 (125-234)||(12488009-12488118)
chr6 (166-234)||(23768162-23768230)
chr6 (84-197)||(10115659-10115770)
chr6 (81-200)||(17380100-17380217)
chr6 (163-222)||(13823428-13823487)
chr6 (80-178)||(16130993-16131089)
chr6 (173-223)||(14184604-14184654)
chr6 (254-296)||(20148203-20148245)
chr6 (254-296)||(22184583-22184625)
chr6 (206-234)||(22692072-22692100)
chr6 (171-238)||(30014688-30014756)
[»] chr3 (30 HSPs)
chr3 (89-299)||(2311813-2312021)
chr3 (82-230)||(9801056-9801201)
chr3 (80-200)||(16704405-16704523)
chr3 (83-230)||(21342260-21342405)
chr3 (118-232)||(17143755-17143869)
chr3 (94-232)||(17485608-17485744)
chr3 (89-234)||(8122894-8123036)
chr3 (71-200)||(30606931-30607058)
chr3 (83-232)||(1770796-1770944)
chr3 (122-233)||(28723784-28723895)
chr3 (163-234)||(21649382-21649453)
chr3 (123-232)||(431327-431436)
chr3 (125-230)||(12516158-12516263)
chr3 (89-233)||(28715467-28715604)
chr3 (169-230)||(1475722-1475783)
chr3 (89-232)||(20622377-20622520)
chr3 (121-228)||(13085082-13085189)
chr3 (168-226)||(35314178-35314236)
chr3 (168-215)||(9007832-9007879)
chr3 (80-234)||(14860069-14860221)
chr3 (125-231)||(12731574-12731680)
chr3 (118-229)||(13932921-13933029)
chr3 (126-234)||(21652612-21652719)
chr3 (9-60)||(28723668-28723719)
chr3 (173-203)||(10896103-10896133)
chr3 (173-230)||(7743409-7743466)
chr3 (125-234)||(12251957-12252066)
chr3 (13-61)||(9800984-9801031)
chr3 (166-234)||(25495908-25495975)
chr3 (173-213)||(49631513-49631553)
[»] scaffold0505 (1 HSPs)
scaffold0505 (119-296)||(7792-7969)
[»] scaffold0023 (1 HSPs)
scaffold0023 (7-226)||(95703-95924)
[»] scaffold0174 (1 HSPs)
scaffold0174 (120-234)||(29286-29398)
[»] scaffold0360 (1 HSPs)
scaffold0360 (83-224)||(13901-14040)
[»] scaffold0140 (1 HSPs)
scaffold0140 (80-220)||(6281-6419)
[»] scaffold0291 (2 HSPs)
scaffold0291 (83-197)||(15403-15515)
scaffold0291 (118-232)||(8583-8696)
[»] scaffold0054 (1 HSPs)
scaffold0054 (82-203)||(68774-68891)
[»] scaffold0205 (2 HSPs)
scaffold0205 (125-223)||(10928-11026)
scaffold0205 (89-234)||(22855-22998)
[»] scaffold0002 (2 HSPs)
scaffold0002 (125-234)||(379685-379794)
scaffold0002 (80-223)||(120981-121122)
[»] scaffold0013 (1 HSPs)
scaffold0013 (165-221)||(4477-4533)
[»] scaffold0101 (1 HSPs)
scaffold0101 (163-234)||(10769-10840)
[»] scaffold0005 (1 HSPs)
scaffold0005 (126-217)||(215258-215349)
[»] scaffold0057 (1 HSPs)
scaffold0057 (118-232)||(73808-73922)
[»] scaffold0074 (1 HSPs)
scaffold0074 (120-232)||(35224-35337)
[»] scaffold0103 (1 HSPs)
scaffold0103 (125-237)||(40762-40874)
[»] scaffold0022 (1 HSPs)
scaffold0022 (169-221)||(69281-69333)
[»] scaffold0294 (1 HSPs)
scaffold0294 (80-195)||(212-326)
[»] scaffold0263 (1 HSPs)
scaffold0263 (125-233)||(20510-20618)
[»] scaffold0328 (1 HSPs)
scaffold0328 (125-225)||(10246-10346)
[»] scaffold0092 (1 HSPs)
scaffold0092 (84-234)||(21592-21740)
[»] scaffold0034 (1 HSPs)
scaffold0034 (83-234)||(18444-18592)
[»] scaffold0518 (1 HSPs)
scaffold0518 (163-220)||(8954-9010)
[»] scaffold0380 (1 HSPs)
scaffold0380 (125-234)||(6873-6982)
[»] scaffold0096 (1 HSPs)
scaffold0096 (163-223)||(42229-42289)
[»] scaffold0464 (1 HSPs)
scaffold0464 (125-231)||(11488-11591)
[»] scaffold0126 (1 HSPs)
scaffold0126 (117-223)||(31830-31933)


Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 9 - 608
Target Start/End: Complemental strand, 21161456 - 21160821
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcaca-----cgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgact 99  Q
    |||||||||||||| |||||||| ||||||| ||||||||||     |||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  21161456 aggatcacccttcacgtgtcctccaaccgctccctaatcacatcacacgctgcaaaacttggaaacagttatcttcacgagcgcctatgtaagggtgact 21161357  T
Q  100 ttgcttcaccctcaaagt------------gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggag 187  Q
    ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21161356 ttgcttcaccctcaaagtcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggag 21161257  T
Q  188 tgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactg 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  21161256 tgctaacgtgcctgcagacac-tttcgttccaccgcgaagactcatcttccccgttccagagcatattctgccaacattgcctctcatccatcctcactg 21161158  T
Q  288 gacagatcaatgcatgtcttttaattatagatcttctaaga----------------tctaataagtttattcgtgtcaagattatcaaacctatatcga 371  Q
    |||||||||||||||||||||||||||||| ||||||||||                ||||||||| ||||| |||||||||||||||||||||||||||    
T  21161157 gacagatcaatgcatgtcttttaattataggtcttctaagaactcatcatcaaaacatctaataagcttatttgtgtcaagattatcaaacctatatcga 21161058  T
Q  372 gctccatttaggcgataactcataaaacaccgctgactctttacaaattcttcaaatctgaaaaaatacataagtgatcattcgaaaaattcttaccaaa 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21161057 gctccatttaggcgataactcataaaacaccgctgactctttacaaattcttcaaatctgaaaaaacacataagtgatcattcgaaaaattcttaccaaa 21160958  T
Q  472 cttcatattgcaaggatacacatggtgaaagataacatgcacaattgtgctcaatgtcgcaccccaaaacggctctcaaaggtctgcctacgcaacaaac 571  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  21160957 cttgatattgcaaggatacacatggtgaaagataacatgcacaattgtgctcaatgtctcaccccaaaacggctctcaaaggtctgcctacacaacaaac 21160858  T
Q  572 atttgactatttaactctttcaatcaatgttctatta 608  Q
    |||||||||||||||||||||||||||||||||||||    
T  21160857 atttgactatttaactctttcaatcaatgttctatta 21160821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 80 - 298
Target Start/End: Complemental strand, 29373567 - 29373351
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| | |||||||| ||||||||||||||| ||  |||||||| ||||||||||| ||||||||||| |||||| || | ||  |||||||||||    
T  29373567 gcgcctatatgagggtgacattgcttcaccctcaaggt--atgattcaattttcacaacattttctacacactctttctcaattacacaactgacttgag 29373470  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccat 279  Q
    | ||||||| ||||| ||||||||  ||||||||||| |||||| || |||||||  | || | ||||| ||| |||| |||  ||||||||||||| ||    
T  29373469 cattggagtcctaacatgcctgcatgcacctttcgtttcaccgcaaaaactcatcaccaccgtaccagaacattttccaccactattgcctctcatctat 29373370  T
Q  280 cctcactggacagatcaat 298  Q
    |||||||||||||||||||    
T  29373369 cctcactggacagatcaat 29373351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 9135335 - 9135479
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    |||| ||||||||| |||||||||||||||| ||  |||||||||||||||||||| ||| ||||||| |||||| || |||||||||||||||||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggt--atgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgtt 9135432  T
Q  184 ggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
     ||||||||||||||||  |  ||||||||||||||||| |||||||    
T  9135433 agagtgctaacgtgcctatatgcacctttcgttccaccgtgaagact 9135479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 26762881 - 26763022
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| || ||||| | ||||||||||||||| ||  ||||||||||||||||||||||||||||||||  ||| | |  ||| |||||||||||||    
T  26762881 gcgcctatatatgggtgtccttgcttcaccctcaaggt--atgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgag 26762978  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||||||||||||||||   |||||||| ||||||||    
T  26762979 cgttggagtgctaacgtgcctgcaagaacctttcgctccaccgc 26763022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 5863308 - 5863156
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    ||||||||  ||||||||| ||||| ||||||||| ||  ||||||||||||| |||||| ||||||||||| |||||| |  || ||||||||||||||    
T  5863308 gcgcctatacaagggtgacattgctccaccctcaaggt--atgattcactttttacaacattttctacacactctttctcagttcgattactgacttgag 5863211  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||| |||||||||||||| ||||  ||  |||||||| |||| |||||||||||    
T  5863210 cgtttgagtgctaacgtgcttgcacgcaaatttcgttctaccgtgaagactcatc 5863156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 7486628 - 7486525
Alignment:
Q  120 atgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    ||||||||||||||||||||| |||||||||  |||||| |  ||||||||||| |||||||||||||||||||||||||||||  |||||||| |||||    
T  7486628 atgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgcctgcatgcacctttcattcca 7486529  T
Q  220 ccgc 223  Q
    ||||    
T  7486528 ccgc 7486525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 9867945 - 9868058
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    ||||||||||||||| ||||||||||||||| || ||| || |  ||||||||||||||||||||  |||||||||||| ||||||  |||||||||| |    
T  9867945 gtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacctttcgtcc 9868044  T
Q  218 caccgcgaagactc 231  Q
    ||||||||||||||    
T  9868045 caccgcgaagactc 9868058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 13292136 - 13292245
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||| |||| | |  | ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||    
T  13292136 tcacttttcacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacg 13292235  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  13292236 aagactcatc 13292245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 16987105 - 16987213
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||| |||||| || |||||||||| |||||| ||  ||||||||||||||| |||  |||||||||||||||||||    
T  16987105 tcacttttcacaacacttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgcg 16987204  T
Q  225 aagactcat 233  Q
    |||||||||    
T  16987205 aagactcat 16987213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 12644897 - 12644754
Alignment:
Q  90 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcac-aacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    ||||||||  ||||||||||||||| ||  |  ||||||||||||| ||||||||| ||||||  ||||| |  |||||||||||| ||||||| |||||    
T  12644897 aagggtgaacttgcttcaccctcaacgtaca--attcacttttcaccaacactttccacacactttttctcagttccattactgacctgagcgtcggagt 12644800  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||| ||||||||  ||||||||||||||||| |||||||||||    
T  12644799 gctaacttgcctgcatgcacctttcgttccaccgtgaagactcatc 12644754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 39879470 - 39879356
Alignment:
Q  120 atgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    ||||||||||||| |||||||||| ||||||| |||||| |  | |||||||||||||||||||  |||| ||||||| |||||| ||||||||||||||    
T  39879470 atgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttcca 39879371  T
Q  220 ccgcgaagactcatc 234  Q
    || |||||| |||||    
T  39879370 ccacgaagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 5925526 - 5925585
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5925526 tccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 5925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 2226673 - 2226612
Alignment:
Q  173 acttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||    
T  2226673 acttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaagattcatc 2226612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 10287609 - 10287706
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    ||||||||||||||||||  |||||||  ||||| |  |||||||||||||||||||||   ||||||||||||||||||  |||||| |||||||||    
T  10287609 tcacttttcacaacacttcttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcctgcaggaacctttggttccaccg 10287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 43172006 - 43172114
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  |||||||||||||||  |||||||||||||||||||||||||         |||||||| |  ||||||| |||||||||    
T  43172006 gcgcctatataagggtgaagttgcttcaccctcaa--tgtatgattcacttttcacaacact---------cactttctcagttccattattgacttgag 43172094  T
Q  180 cgttggagtgctaacgtgcc 199  Q
    | ||||||||||||||||||    
T  43172095 cattggagtgctaacgtgcc 43172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 26562942 - 26562891
Alignment:
Q  178 agcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagac 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26562942 agcgttggagtgctaatgtgcctgcagacacctttcgttccaccgtgaagac 26562891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 9573400 - 9573545
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||||||| ||||||||  |||  |||||||||||  |||| || |||||  ||||||| |||||| |  |||  || ||||||| ||||    
T  9573400 cctatataagggtgacttagcttcacctccaa--tgtatgattcatgtttccca-cacttcttacacactctttctcagttcccatattgacttgtgcgt 9573496  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    |||||||||||||||||||||| ||||  | |||||||||| |||||||    
T  9573497 tggagtgctaacgtgcctgcaggcaccccttgttccaccgcaaagactc 9573545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 34854321 - 34854220
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||| ||  ||||||| |||||| |  | ||||||| ||||||||||  ||||||||||||| ||||| ||||| ||||||||||| ||    
T  34854321 tcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttccaccacg 34854222  T
Q  225 aa 226  Q
    ||    
T  34854221 aa 34854220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 16203918 - 16203768
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgct 104  Q
    ||||||||||| || |||||||||||||||| |||||||||||||  | ||||  |||     |||||  | ||||| ||||| ||||||||||||| ||    
T  16203918 aggatcaccctacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgacttttct 16203819  T
Q  105 tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttc 157  Q
    ||||||| || ||  ||| ||||||||||| |||||||| ||||||| |||||    
T  16203818 tcacccttaaggt--atggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 27803403 - 27803358
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttc 213  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  27803403 tactgacttgagcgttggagtgctaacgtgcctgtagacatctttc 27803358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 18774021 - 18773961
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||| |||| ||| | ||||||||||||||||||  ||||||||||||||||||    
T  18774021 tccattactgatttgatcgtcgaagtgctaacgtgcctgcatgcacctttcgttccaccgc 18773961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 1979102 - 1979044
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    ||||||||||||||||||||  |||| ||||||||| ||||| ||||||||||| ||||    
T  1979102 tccattactgacttgagcgtcagagtactaacgtgcttgcaggcacctttcgtttcacc 1979044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 12004751 - 12004854
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagc 180  Q
    ||||||| |||||||||||| |||||||| |||||| | |||||| ||||||| || |||||| ||||||||| |||| |  |||| |||||| ||||||    
T  12004751 cgcctatataagggtgacttagcttcacc-tcaaaggg-atgattgacttttccca-cactttttacacacaccttctgatttccaatactgatttgagc 12004847  T
Q  181 gttggag 187  Q
    |||||||    
T  12004848 gttggag 12004854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 12163751 - 12163805
Alignment:
Q  176 tgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    ||||||||||||||||||||||||| ||| |||| | |||||||||| |||||||    
T  12163751 tgagcgttggagtgctaacgtgccttcaggcaccctccgttccaccgtgaagact 12163805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 5929024 - 5929100
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctg 201  Q
    ||||||||||||||||||  ||||| | || | | |  ||||||||||||||||| ||||||||||||| |||||||    
T  5929024 tcacttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgcctg 5929100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 16204487 - 16204443
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgc 53  Q
    ||||||||||| || |||||||||||||||| |||||||||||||    
T  16204487 aggatcaccctacacgtgtcctctaaccgctccctaatcacacgc 16204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 4229891 - 4229848
Alignment:
Q  170 ctgacttgagcgttggagtgctaacgtgcctgcagacacctttc 213  Q
    |||||||||||||| |||||||||||||||| || |||||||||    
T  4229891 ctgacttgagcgttagagtgctaacgtgcctacaaacacctttc 4229848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 13159439 - 13159344
Alignment:
Q  138 cactttctacacacactt-tcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    |||||| ||||||| ||| |||||  |||| |||||| |||||| |||||||| |||||||||||||| ||| ||| || || |||| ||||||||    
T  13159439 cactttttacacactcttctcttagttccaatactgatttgagcattggagtgttaacgtgcctgcaggcacattttgtcccgccgcaaagactca 13159344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 33799997 - 33799934
Alignment:
Q  172 gacttgagcgttggagtgctaacgtgcctgcagacacctttcgt-tccaccgcgaagactcatc 234  Q
    |||||||| ||| |||| |||||||||||||| ||||||||| | ||||||| |||||||||||    
T  33799997 gacttgagggttcgagttctaacgtgcctgcaaacacctttcatctccaccgtgaagactcatc 33799934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 16204409 - 16204343
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 151  Q
    ||||| ||||||||| ||| ||||||||| || ||  ||| |||||||||||||||||||| |||||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggt--atggttcacttttcacaacactttatacacac 16204343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 43172951 - 43172984
Alignment:
Q  265 ttgcctctcatccatcctcactggacagatcaat 298  Q
    ||||||||||||||||||||| ||||||||||||    
T  43172951 ttgcctctcatccatcctcaccggacagatcaat 43172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 4781550 - 4781610
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||||||||||||||| |||  ||| ||||||||||| | || ||||||||||||| ||||    
T  4781550 tccattactgacttgatcgtcagagggctaacgtgccaggaggcacctttcgttcctccgc 4781610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 4813981 - 4814041
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||||||||||||||| |||  ||| ||||||||||| | || ||||||||||||| ||||    
T  4813981 tccattactgacttgatcgtcagagggctaacgtgccaggaggcacctttcgttcctccgc 4814041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 17150001 - 17149942
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||  |||||| ||| ||||||||||||||| ||||| |||||||||| |||||||    
T  17150001 tccattacatacttgatcgtcggagtgctaacgtgcatgcag-cacctttcgtgccaccgc 17149942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 25173933 - 25173869
Alignment:
Q  170 ctgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||| |||||||||| ||||||||||| ||||||  |||||||||| ||||  | ||||||||||    
T  25173933 ctgatttgagcgttgaagtgctaacgtacctgcatgcacctttcgtcccactccaaagactcatc 25173869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 45258047 - 45258324
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgct 104  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||     ||||| |||||||  ||||| ||||||||||||||||    
T  45258047 aggatcaccctgcatgtgtcctctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgct 45258146  T
Q  105 tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcag 204  Q
    |||||||||| ||  ||||||||||||||||||||||||| |||||  ||||||||  | ||||||| |||||||| |||||||| ||||||||||||||    
T  45258147 tcaccctcaaggt--atgattcacttttcacaacactttcgacacattctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcag 45258244  T
Q  205 acacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctca 284  Q
    ||| ||||||||||||||||||||||||||  | || |  || ||||| ||||  || | ||||||||||||||||||||    
T  45258245 acatctttcgttccaccgcgaagactcatcgccaccatatcaaagcattttccatcaccgttgcctctcatccatcctca 45258324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 89 - 296
Target Start/End: Original strand, 12127642 - 12127847
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    ||||| |||| ||||||||||  ||||||  |||||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||||    
T  12127642 taaggttgacattgcttcaccaccaaagt--atgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagt 12127739  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactgg 288  Q
    ||||||||||||||||  ||||||||| ||||||||||||| ||||  | || | ||  ||||| ||| |||||  |||||||||||| ||||| |||||    
T  12127740 gctaacgtgcctgcaggtacctttcgtcccaccgcgaagacccatcaccaccgtaccgaagcattttctgccaatgttgcctctcatctatccttactgg 12127839  T
Q  289 acagatca 296  Q
    ||| ||||    
T  12127840 acatatca 12127847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 80 - 298
Target Start/End: Complemental strand, 12169094 - 12168878
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttg-a 178  Q
    |||||||| |||||||| | ||||||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| |    
T  12169094 gcgcctatttaagggtggcattgcttcaccctcaaggtata--attcacttttcacaacactttctacacactctttcttagttccattactgacttgaa 12168997  T
Q  179 gcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatcca 278  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||  ||   | || |||||| ||||||||   ||||||||||||||    
T  12168996 gcgttggagtgttaatgtgcctgcagacacctttcgttccaccgcaaagacttatc-gccaggtaccggagcattttccgccactgttgcctctcatcca 12168898  T
Q  279 tcctcactggacagatcaat 298  Q
    || |||| ||||| ||||||    
T  12168897 tcttcaccggacatatcaat 12168878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 84 - 234
Target Start/End: Complemental strand, 36267615 - 36267467
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    |||| |||||||||  ||||||||||||||| ||  ||||||||||||||||||| |||||||||||| |||||| |  | |||||||||||||||||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagcgtt 36267518  T
Q  184 ggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||| |||| ||| ||||| |||||||| |||||| |||||||||||||    
T  36267517 ggagtgttaacatgcatgcaggcacctttcattccactgcgaagactcatc 36267467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 3586484 - 3586334
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||| |||  ||||| |  |||||||||||||||||    
T  3586484 gcgcctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctactcactttttctcagttccattactgacttgag 3586387  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    ||| ||||| |||||||||| |||  |||||||| ||||||||| ||||||||    
T  3586386 cgtcggagtcctaacgtgccggcatgcacctttcattccaccgcaaagactca 3586334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 45715106 - 45714964
Alignment:
Q  90 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtg 189  Q
    ||||||||||| |||||||| |||| ||  |||||||| ||||||| ||||||| ||||||| |||||| |  | |||||||||||||||||||||||||    
T  45715106 aagggtgacttagcttcaccttcaaggt--atgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagcgttggagtg 45715009  T
Q  190 ctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||    
T  45715008 ctaacgtgcctgcatgcacctttcgttccaccaggaagactcatc 45714964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 296
Target Start/End: Original strand, 19919036 - 19919250
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||| ||||  |||||||| |||||| ||  ||||||||||||||||||||||||||||| || |||||| |  ||||||| ||||||  |    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggt--atgattcacttttcacaacactttctacatactctttctcatttccattattgactttgg 19919133  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccat 279  Q
    |||| |||| |||| || ||||||| |||||||||||||||| |||||||| |||  | || | || |||||  ||| |||| |||||||||||||||||    
T  19919134 cgttagagttctaatgttcctgcaggcacctttcgttccaccacgaagactgatcgccaccataccggagcactttctgccaccattgcctctcatccat 19919233  T
Q  280 cctcactggacagatca 296  Q
     ||||| ||||| ||||    
T  19919234 tctcaccggacatatca 19919250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 20120432 - 20120322
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    ||||||||||||| ||||| ||||||| |||||| |||||| |  | ||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  20120432 gtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttc 20120333  T
Q  218 caccgcgaaga 228  Q
    ||||| |||||    
T  20120332 caccgtgaaga 20120322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 24499901 - 24499777
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||  |||||||||||| || ||  |||||||||||||||||||| ||||||||||| |||||| |  ||||||||||||||||||||||||||    
T  24499901 taagggtgaacttgcttcacccttaaggt--atgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagcgttggagt 24499804  T
Q  189 gctaacgtgcctgcagacacctttcgt 215  Q
    |||||||| |||  || ||||||||||    
T  24499803 gctaacgttcctagaggcacctttcgt 24499777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 294
Target Start/End: Original strand, 27846493 - 27846701
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    ||||||| |||||||||  |||||||||||| ||  |  ||||||||| |||||||||||||||| ||  ||||| |  |||||||||||||||| ||||    
T  27846493 ctatgtatgggtgacttaacttcaccctcaaggtaca--attcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgtt 27846590  T
Q  184 ggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctc 283  Q
    ||||||||||||||||||||| ||| |||||| | || ||||||||||||   | || | || || || |||||| ||   |||||||||||||||||||    
T  27846591 ggagtgctaacgtgcctgcaggcacttttcgtccaactgcgaagactcattgccaccgtaccggaacacattccgtcactgttgcctctcatccatcctc 27846690  T
Q  284 actggacagat 294  Q
     | ||||||||    
T  27846691 tccggacagat 27846701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 15825230 - 15825126
Alignment:
Q  127 acttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 226  Q
    ||||||||||||||||||||||||| |||||| |  |||||||| |||||||||||   ||||||||||||||||||||||| |||||||||||| | ||    
T  15825230 acttttcacaacactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttccaccacaaa 15825131  T
Q  227 gactc 231  Q
    |||||    
T  15825130 gactc 15825126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 29711137 - 29710987
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  |    ||||||||||||||||||  ||||| | |||||  || ||||||| |||||||||    
T  29711137 gcgcctatataagggtgaacttgcttcaccctcaaggtacaca--tcacttttcacaacacttcgtacactctctttc--aattccattagtgacttgag 29711042  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||    
T  29711041 cgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagacgcatc 29710987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 10923177 - 10923283
Alignment:
Q  124 ttcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||||| |||||||||||||| |||| | |  ||||| ||||||||||| || |||||| |||||||||| || |||||||||||||||||||    
T  10923177 ttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacatacacctttcgttccaccgc 10923276  T
Q  224 gaagact 230  Q
    |||||||    
T  10923277 gaagact 10923283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 18770392 - 18770296
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcc--tgcagacacctttcgttcca 219  Q
    ||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||  |||||||||||||||  || || ||||||||||||||    
T  18770392 tcacttttcacaacactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcctatgtaggcacctttcgttcca 18770296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 19050448 - 19050557
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||| | ||||||||  || |||||||||||||||||  ||||||||||| | ||||| | ||||||||||||||||||    
T  19050448 tcacttttcacaacacttcttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatacctttcgttccaccgcg 19050547  T
Q  225 aagactcatc 234  Q
    || |||||||    
T  19050548 aacactcatc 19050557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 29137979 - 29137870
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||| ||||||| ||  ||||||| |||||| |  | ||||| |||||||||||| || |||||||||| |||||||||| ||||||||||||| ||    
T  29137979 tcactttccacaacatttcttacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacatctttcgttccacctcg 29137880  T
Q  225 aagactcatc 234  Q
    | ||||||||    
T  29137879 atgactcatc 29137870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 18772365 - 18772239
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    |||| |||||||||  ||||||||||||||| ||| | |  |||||||||||||||||||||||||||    |||||  |||||||||   |||||| |     
T  18772365 ctatataagggtgaacttgcttcaccctcaaggtgcacg--tcacttttcacaacactttctacacac----tcttagttccattactactttgagcatc 18772272  T
Q  184 ggagtgctaacgtgcctgcagacacctttcgtt 216  Q
     ||||||||||||||||||| ||||||||||||    
T  18772271 agagtgctaacgtgcctgcaaacacctttcgtt 18772239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 18135949 - 18135842
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    |||||||| |||||||||  ||||||| |||||| |  ||||||||| ||||||||||  |||| ||||||||||| ||| |||||||| | |||||| |    
T  18135949 tcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcgtcagagtactaacgtgcctacaggcacctttcatcccaccgtg 18135850  T
Q  225 aagactca 232  Q
    ||||||||    
T  18135849 aagactca 18135842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 17672007 - 17671942
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||| |||||| |||||| ||||||||| |||||||||||||||||||||||  |||||||||||    
T  17672007 actgatttgagcattggagcgctaacgtgtctgcagacacctttcgttccaccatgaagactcatc 17671942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 24755549 - 24755441
Alignment:
Q  122 gattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    |||||||||||||||||| |||||||||||  ||||  |  ||||| ||||||||||| |||||||| ||||||||| || |  || ||||||||||| |    
T  24755549 gattcacttttcacaacaatttctacacactttttcagagttccatcactgacttgagggttggagtactaacgtgcttgtatgcaactttcgttccaac 24755450  T
Q  222 gcgaagact 230  Q
     ||||||||    
T  24755449 acgaagact 24755441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 15390555 - 15390707
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  |    ||||||||||||||||||  |||||||  ||| |||  ||||| ||| |||||||    
T  15390555 gcgcctatataagggtgaacttgcttcaccctcaaggtacaca--tcacttttcacaacacttcttacacactgtttattagttccatcacttacttgag 15390652  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||   ||||||||||||||   || || ||||||||||| ||||||||||||||    
T  15390653 cgtcaaagtgctaacgtgccaataggcagctttcgttccatcgcgaagactcatc 15390707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 30638628 - 30638534
Alignment:
Q  138 cactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    ||||||| || ||| ||||||||  |||||||||||| ||||||| | |||| ||||||| ||| ||||| ||||| ||||||||||| ||||||    
T  30638628 cactttccacgcactctttcttagttccattactgacatgagcgtcgaagtgttaacgtgtctgtagacatctttctttccaccgcgatgactca 30638534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 17626935 - 17626870
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||| |||||| |||||| ||||||||| |||||||||||||||||||||||   ||||||||||    
T  17626935 actgatttgagcattggagagctaacgtgtctgcagacacctttcgttccaccataaagactcatc 17626870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 26713591 - 26713632
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacc 209  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  26713591 tactgacttgagtgttggagtgctaacgtgcctgcagacacc 26713632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 24157357 - 24157413
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    ||||||||||||||||||||  |||||||||||||| || || ||||||||||||||    
T  24157357 tccattactgacttgagcgtcagagtgctaacgtgcatgtaggcacctttcgttcca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 24318953 - 24318893
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||| |||||| ||| ||| ||||||||||||||||| | ||||||||||||||||    
T  24318953 tccattactaacttgatcgtcggaatgctaacgtgcctgcaggcgcctttcgttccaccgc 24318893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 28426178 - 28426233
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||| | | |||||||||| |||||||||| ||||||||||||||||||    
T  28426178 tactgacttgatcatcggagtgctaatgtgcctgcaggcacctttcgttccaccgc 28426233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 17560797 - 17560744
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||| || |||||    
T  17560797 actgacttgagcgttgggctgctaacgtgcctgcagacacccttcatttcaccg 17560744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 12634880 - 12634828
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    |||||||| || ||||||||| |||||||||||||  ||||||||||||||||    
T  12634880 actgacttaagagttggagtgttaacgtgcctgcatgcacctttcgttccacc 12634828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 18134341 - 18134269
Alignment:
Q  213 cgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcac 285  Q
    |||||||||||||||| ||||| || |||| || |||||| |||||||| | ||| |||||||||||| ||||    
T  18134341 cgttccaccgcgaagaatcatcgtcaccctaccggagcattttccgccaccgttgtctctcatccatcgtcac 18134269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 36022496 - 36022447
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||||||||||| ||||| |||||||||| || | |||||||||||    
T  36022496 tactgacttgagcgttagagtgttaacgtgcctacatatacctttcgttc 36022447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 40800152 - 40800099
Alignment:
Q  175 ttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaaga 228  Q
    |||| ||||| ||||||||||||||| ||  ||||||||||||||||| |||||    
T  40800152 ttgaacgttgaagtgctaacgtgcctacattcacctttcgttccaccgtgaaga 40800099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 19809828 - 19809614
Alignment:
Q  74 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactga 173  Q
    ||||| ||||||||||||||||||||| | ||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||  | |||||||||    
T  19809828 tcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtata--attcacttttcacaacactttctacacactctttcttagtttcattactga 19809731  T
Q  174 cttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctc 273  Q
    ||||||||||||||||||||| || ||||||  |||||||| || |||||||||||||||| || || | |||||||| ||||| ||| | |||||| |     
T  19809730 cttgagcgttggagtgctaacatgtctgcaggaacctttcg-tcaaccgcgaagactcatcgtcaccgtaccagagcacattccaccaccgttgcctttt 19809632  T
Q  274 atccatcctcactggaca 291  Q
    ||||||||||||||||||    
T  19809631 atccatcctcactggaca 19809614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 12683906 - 12683754
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||  |||||||||  |||||||||||| || ||  |||||||||||||||||||||||||||||||| |||||| |  | ||||||| |||||||    
T  12683906 gcgcctagataagggtgaacttgcttcacccttaaggt--atgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgag 12683809  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  12683808 cgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatc 12683754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 47253398 - 47253249
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||| ||||||| |||||| |  |||||||||||||||||    
T  47253398 gcgcctatataagggtgacttagcttcaccctcaaggt--atgattcacttttcacaacactttttacacactctttctcagttccattactgacttgag 47253301  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    ||||||||||||||| ||||||||  ||||||| || ||||| |||||||||    
T  47253300 cgttggagtgctaacatgcctgcaagcaccttttgtcccaccccgaagactc 47253249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 117 - 297
Target Start/End: Complemental strand, 10981951 - 10981772
Alignment:
Q  117 tgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgtt 216  Q
    ||||||||||||||||| || |||||| ||||||| ||||||    ||||||||||||||||| |||||||||| |||||  |||||| ||||||||||     
T  10981951 tgtatgattcacttttccca-cactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtc 10981853  T
Q  217 ccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactggacagatcaa 297  Q
    |||| ||||||||||||| || || | |  ||||| ||||| |||   ||||||||||||||||||||  |||||||||||    
T  10981852 ccactgcgaagactcatcatcaccgtactggagcacattccaccattgttgcctctcatccatcctcatcggacagatcaa 10981772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 15514574 - 15514678
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||| ||||||||||  ||||||| |||| | |  |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  15514574 tcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccgcg 15514673  T
Q  225 aagac 229  Q
    |||||    
T  15514674 aagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 19643822 - 19643673
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagc 180  Q
    ||||||| |||||||||  ||| ||||||||||| ||  |||||||||||||||||| ||||||||||||| |||||| |  |||||||||||||| |||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggt--atgattcacttttcacaagactttctacacactctttctcagttccattactgacttaagc 19643725  T
Q  181 gttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    || ||| || |||||| ||||| | |||||| ||||||| | ||||||||||    
T  19643724 gtcggattggtaacgtacctgcgggcaccttccgttccatcacgaagactca 19643673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 15742166 - 15742275
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  |||||||  ||||| |  ||||||||||||||||||||  ||||||||||||||| |||| ||||||||| |||||| ||    
T  15742166 tcacttttcacaacacttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacg 15742265  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  15742266 aagactcatc 15742275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 118 - 302
Target Start/End: Complemental strand, 19818778 - 19818595
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||| ||||||||||||||||||||||||||||| |||  ||   |  | ||||||||||||||||||||||||||| |  ||| ||  ||||||||| |    
T  19818778 gtataattcacttttcacaacactttctacacactcttgattggtttaagtactgacttgagcgttggagtgctaacatatctgtaggaacctttcgt-c 19818680  T
Q  218 caccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactggacagatcaatgcat 302  Q
    ||||||||||||||||| || || | |||||||| ||||| ||| | |||||| | |||||||||||  ||||| || |||||||    
T  19818679 caccgcgaagactcatcgtcaccgtaccagagcacattccaccaccgttgccttttatccatcctcatcggacatatgaatgcat 19818595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 29157223 - 29157082
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  || ||||||| |||| ||  ||| |||||||| |||||||||| ||||||||  ||||| |  ||||||||| |||||||    
T  29157223 gcgcctatataagggtgaacttacttcaccatcaaggt--atggttcactttacacaacacttactacacactttttctcagttccattactaacttgag 29157126  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||| |||||| |||||  ||||||||||||||||||    
T  29157125 cgttggagtgcaaacgtgtctgcatgcacctttcgttccaccgc 29157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 3981981 - 3981869
Alignment:
Q  172 gacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctc 271  Q
    |||||||| |||||||||||||||||| ||||  ||||||||||||||||| ||||||||||| || |  | || || ||| |||||||| | |||||||    
T  3981981 gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatcctcactgtaccggaacattttccgccaccgttgcctc 3981882  T
Q  272 tcatccatcctca 284  Q
    |||||||||||||    
T  3981881 tcatccatcctca 3981869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 5518661 - 5518513
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  | |  ||||||| ||||||||||  ||||||  || ||| |  || ||||||||||||||    
T  5518661 gcgcctatataagggtgaacttgcttcaccctcaaggt--acgcatcactttccacaacacttcttacacattctctctcagttcaattactgacttgag 5518564  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    ||||| |||||||||||| |||||  ||||||||||||||  |||||||||    
T  5518563 cgttgaagtgctaacgtgtctgcactcacctttcgttccattgcgaagact 5518513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 14602029 - 14602120
Alignment:
Q  126 cacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||||||||||||  ||||||| || | | |  | |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  14602029 cacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 14602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 2674580 - 2674681
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    ||||||||||||||||||||||||||||||||||    ||| |  | ||||| ||||||| |||||||||||||||| || ||||| ||||||||||  |    
T  2674580 gtatgattcacttttcacaacactttctacacac----tctcagttacattattgacttgtgcgttggagtgctaacatgactgcatacacctttcgccc 2674675  T
Q  218 caccgc 223  Q
    ||||||    
T  2674676 caccgc 2674681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 14003073 - 14003184
Alignment:
Q  121 tgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    ||||||| |||||| ||||||||| ||| || |||||| |  ||||||||||||||||||||   |||||||||||  || |||  ||||||||||||||    
T  14003073 tgattcatttttcataacactttccacaaactctttctcagttccattactgacttgagcgtcatagtgctaacgttgcttcaggaacctttcgttccac 14003172  T
Q  221 cgcgaagactca 232  Q
    ||| ||||||||    
T  14003173 cgcaaagactca 14003184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 13171119 - 13171065
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  13171119 tccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttcgttc 13171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 17110738 - 17110678
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||||||||||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||||    
T  17110738 tccattactgacttgatcgtcggagtgctaacgtgcttgcaggcacatttcgttccaccgc 17110678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 16012522 - 16012588
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagac 229  Q
    |||||||||||||||||||| |||||| ||||||||||||||  ||| ||||| || ||| ||||||    
T  16012522 tccattactgacttgagcgtcggagtgttaacgtgcctgcaggtaccattcgtccctccgtgaagac 16012588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 1638369 - 1638425
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    |||||||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||    
T  1638369 tccattactgacttgatcgtcggagtgctaaagtg-ctgcaaacacctttcgttccac 1638425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 12415476 - 12415437
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgc 202  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  12415476 tccattacttacttgatcgttggagtgctaacgtgcctgc 12415437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 19563996 - 19563945
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    |||||||||| ||| | ||||||||||||||||||| |||||||||| ||||    
T  19563996 actgacttgatcgtcgcagtgctaacgtgcctgcaggcacctttcgtcccac 19563945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 19473610 - 19473672
Alignment:
Q  171 tgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcat 233  Q
    |||||||||||||||||| ||||||||| |  | |||||||| || |||||||||| ||||||    
T  19473610 tgacttgagcgttggagttctaacgtgcttataaacaccttttgtcccaccgcgaaaactcat 19473672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 40979154 - 40979232
Alignment:
Q  206 cacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctca 284  Q
    |||||||||||||||| || |||||||||  | || | ||||||||  |||| | | ||||||||||||||||||||||    
T  40979154 cacctttcgttccaccacggagactcatcaccaccataccagagcactttccactaccattgcctctcatccatcctca 40979232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 50151775 - 50151808
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaa 114  Q
    ||||||| ||||||||||||||||||||||||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaa 50151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 23609796 - 23609828
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcct 200  Q
    |||||||||||||||||||||||| ||||||||    
T  23609796 tactgacttgagcgttggagtgctgacgtgcct 23609828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 35043188 - 35043244
Alignment:
Q  172 gacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaaga 228  Q
    ||||||||||||| ||||||||||||  |||||  ||| |||||||||| |||||||    
T  35043188 gacttgagcgttgaagtgctaacgtgtttgcagggacccttcgttccactgcgaaga 35043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 27083148 - 27083423
Alignment:
Q  24 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 119  Q
    |||||||||||| |||  |||||||||||| ||||||| ||||     ||||  ||||| ||||||||| |||||||||||  |||||||||||| ||      
T  27083148 gtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggt-- 27083245  T
Q  120 atgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||||||||||||||||||||||||||||| |||||  |  | | ||||||||||||| ||||||||||||||||| |||||||||| |||||||| |    
T  27083246 atgattcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgcagacacatttcgttcta 27083344  T
Q  220 ccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactggacagatcaat 298  Q
    |||||||||||| ||  | |  |   |||||| ||||||||| | |||  ||||||| |||||||| ||||||||||||    
T  27083345 ccgcgaagactcttcgccactgtaatagagcacattccgccaccgttgtttctcatcaatcctcaccggacagatcaat 27083423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 89 - 296
Target Start/End: Complemental strand, 22903205 - 22903000
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||  ||| ||||||||||| ||  |||||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||||||| |||    
T  22903205 taagggtgatattgtttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaagt 22903108  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactgg 288  Q
    |||||| ||||| |  | |||||||||||||||||||| |||||||  | || | |   ||||  |||||||||| ||||||||||||||||||||  ||    
T  22903107 gctaacatgcctacgaaaacctttcgttccaccgcgaaaactcatcaccaccgtactgaagcactttccgccaacgttgcctctcatccatcctcatcgg 22903008  T
Q  289 acagatca 296  Q
    ||||||||    
T  22903007 acagatca 22903000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 26994576 - 26994706
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||| ||||||||||| ||| ||  ||||||||||||||||||||| ||||| |||| |||||| || |||||||||||||||||    
T  26994576 gcgcctatataagggtgaccttgcttcacccccaaggt--atgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgag 26994673  T
Q  180 cgttggagtgctaacgtgcctgcagacaccttt 212  Q
    ||| |||||||||||||| ||| ||||||||||    
T  26994674 cgtcggagtgctaacgtgtctgaagacaccttt 26994706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 84 - 284
Target Start/End: Complemental strand, 8939028 - 8938829
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    |||| ||| |||||||| |||||||||||||  ||||||||||||||||| || |||||| ||||||| |||||| |  |||| |||||||| |||| ||    
T  8939028 ctatataacggtgacttagcttcaccctcaa--tgtatgattcacttttccca-cactttttacacactctttctcagttccaatactgactagagcatt 8938932  T
Q  184 ggagtgctaacgtgcctgcagacacctttcgttccaccg--cgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcc 281  Q
    |||||| |||||||||||||  |||||||||||| ||||  | ||||||||||  | || | ||||||||  |||||||| |||||||||||||||||||    
T  8938931 ggagtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcatcgccaccgtaccagagcactttccgccaccattgcctctcatccatcc 8938832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 74 - 285
Target Start/End: Complemental strand, 20025410 - 20025201
Alignment:
Q  74 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactga 173  Q
    ||||| |||||| | |||||||||| | ||||||||||||| |   |||||||||||| ||||||||||||||||||| |||||| |  | |||| ||||    
T  20025410 tcacgcgcgcctgtataagggtgacctagcttcaccctcaagga--atgattcactttacacaacactttctacacactctttctcagtttcattcctga 20025313  T
Q  174 cttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctc 273  Q
    |   |||||||||||| |||||||  |||||||||||||||| |||||||||||||||||   | || | ||| |||| |||||||||  | ||||||||    
T  20025312 cagtagcgttggagtgttaacgtgtgtgcagacacctttcgtcccaccgcgaagactcattgacaccgtaccaaagcacattccgccactagtgcctctc 20025213  T
Q  274 atccatcctcac 285  Q
    ||||||||||||    
T  20025212 atccatcctcac 20025201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 25537526 - 25537377
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  || |||||||||||| || ||    ||||||||||||||||||  ||||||  |||||| |  ||||||||   ||||||    
T  25537526 gcgcctatataagggtgaactttcttcaccctcaaggtataca--tcacttttcacaacacttcatacacaatctttctcagttccattacaatcttgag 25537429  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  25537428 cgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactc 25537377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 25333836 - 25333710
Alignment:
Q  100 ttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcc 199  Q
    ||||||||| ||||||||  ||||||||||||| |||||||||||||||||| || |||||  | |||||||||||||||||| ||||| ||||  ||||    
T  25333836 ttgcttcactctcaaagt--atgattcacttttaacaacactttctacacactctctcttagttacattactgacttgagcgtcggagtactaatatgcc 25333739  T
Q  200 tgcagacacctttcgttccaccgcgaaga 228  Q
    ||||   |||||||| |||||||||||||    
T  25333738 tgcaagtacctttcgctccaccgcgaaga 25333710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 26348130 - 26348190
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26348130 tccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 26348190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 24546386 - 24546318
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  24546386 tccattactgactttagcgt-ggagttctaacgtgcctgcagacacctttcgttccaccatgaagactca 24546318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 32418466 - 32418593
Alignment:
Q  90 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtg 189  Q
    ||||||||  |||||||| |||||| ||  |||||||||| ||||||||||| ||||||||| ||||||    ||||| | ||||||||||||  |||||    
T  32418466 aagggtgaacttgcttcatcctcaaggt--atgattcactcttcacaacactctctacacactctttctctgttccatcagtgacttgagcgtcagagtg 32418563  T
Q  190 ctaacgtgcctgcagacacctttcgttcca 219  Q
     | |||||||||||| | ||||||||||||    
T  32418564 ttgacgtgcctgcaggctcctttcgttcca 32418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 22865881 - 22865735
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagc 180  Q
    ||||||| |||||||||  ||||||||||||||| ||  |    ||||||||||||||| ||  |||||||  ||||| |  ||||||||| ||||||||    
T  22865881 cgcctatataagggtgaacttgcttcaccctcaaggtacaca--tcacttttcacaacatttcttacacactttttctcagttccattactaacttgagc 22865784  T
Q  181 gttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagac 229  Q
    ||   ||||||||||| ||||||  ||||||||||||||| ||||||||    
T  22865783 gtcaaagtgctaacgtacctgcatgcacctttcgttccactgcgaagac 22865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 16621237 - 16621177
Alignment:
Q  174 cttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||| |||| |||||||||| || |||||||||||||||||| |||||||||||    
T  16621237 cttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatc 16621177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 4477233 - 4477167
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||||||||  |||||||||||| | |||| ||||| ||||||| ||||||||||    
T  4477233 tactgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgcaaagactcatc 4477167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 34493625 - 34493489
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||||| | ||||||||||| ||  ||||||||||||||||||||||||||  |||| |||||  || ||||||||||||||||    | ||      
T  34493625 taagggtgacttagtttcaccctcaaggt--atgattcacttttcacaacactttct--acactctttc--aattccattactgacttga---attgaac 34493535  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    | ||||||||||||| |||||||| || ||||| | ||||||||||    
T  34493534 gttaacgtgcctgcaaacacctttagtcccaccacaaagactcatc 34493489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 227739 - 227800
Alignment:
Q  173 acttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||| ||||||||||||||||||||||||  ||| | ||||| ||||||||||||    
T  227739 acttgagcgtttgagtgctaacgtgcctgcagacactcttcatcccaccacgaagactcatc 227800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 25829001 - 25829106
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||| ||||  |||||||  ||||| || ||||||| ||||| ||||||  || |||||||||||||| | |||| ||| |||| ||||||    
T  25829001 tcacttttcacaatacttcttacacactttttctcaattccattattgactagagcgtcagattgctaacgtgcctgaatacacattttgttcaaccgcg 25829100  T
Q  225 aagact 230  Q
    ||||||    
T  25829101 aagact 25829106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 18799820 - 18799760
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||||||||||||||| ||| |||||||||||||| ||||||  | |||||||||||||||    
T  18799820 tccattactgacttgatcgtcggagtgctaacgtgactgcaggaatctttcgttccaccgc 18799760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 19846125 - 19846053
Alignment:
Q  147 cacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    ||||| ||||||||  |||| |||||||||||| ||| ||||||||| ||| |||||| ||||||||||||||    
T  19846125 cacactctttcttagttccaatactgacttgagtgttagagtgctaatgtgtctgcaggcacctttcgttcca 19846053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 26163691 - 26163619
Alignment:
Q  147 cacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    ||||| ||||||||  | |||| |||||||||||||||||||||||| |||| ||||  ||||||||||||||    
T  26163691 cacactctttcttagtttcatttctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttcca 26163619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 19993182 - 19993285
Alignment:
Q  129 ttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaaga 228  Q
    |||||||||||||||| |||| | |||||| |  |||||||||||||||||  ||||| |||||| ||| |||||   ||||||  | ||||||||||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtgtctgcaagaaccttttttcccaccgcgaaga 19993281  T
Q  229 ctca 232  Q
    ||||    
T  19993282 ctca 19993285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 31202479 - 31202550
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||| ||||||||||||||| ||| ||||||||| |||| || ||| ||  |||||||||||||||||||||    
T  31202479 tccaatactgacttgagcgtcggaatgctaacgttcctgtaggcactttctgttccaccgcgaagactcatc 31202550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 7449827 - 7449761
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||| ||||||||||    
T  7449827 tactgacttaagcgttagagtgctaacgtgtctgaatgcacctttcgtcccaccgcaaagactcatc 7449761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 18803958 - 18803900
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    ||||||||||| || | |||||||||||||||||| || ||| ||||||||||||||||    
T  18803958 tccattactgaattaatcgttggagtgctaacgtgtcttcaggcacctttcgttccacc 18803900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 24647409 - 24647302
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  |||||||||||| || || ||    ||||||||||||||||||  ||||||| |||| | |  ||||||||||| |||||    
T  24647409 gcgcctatataagggtgaacttgcttcacccttaaggtataca--tcacttttcacaacacttcttacacactctttttcagttccattactgaattgag 24647312  T
Q  180 cgttggagtg 189  Q
    ||||||||||    
T  24647311 cgttggagtg 24647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 18884508 - 18884551
Alignment:
Q  170 ctgacttgagcgttggagtgctaacgtgcctgcagacacctttc 213  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||    
T  18884508 ctgatttgagctttggagtgctaacgtgcctgcagacacatttc 18884551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 19990966 - 19991023
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga 66  Q
    ||||||||||| ||  |||| |||||||||| ||||||||||||| || |||||||||    
T  19990966 aggatcaccctacacatgtcttctaaccgctccctaatcacacgccgcgaaacttgga 19991023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 8939095 - 8939059
Alignment:
Q  21 catgtgtcctctaaccgcttcctaatcacacgctgca 57  Q
    ||||||||||||||||||| ||||||||||||| |||    
T  8939095 catgtgtcctctaaccgctccctaatcacacgccgca 8939059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 30827093 - 30827053
Alignment:
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    |||| |||||||||||||||||||  |||||||||||||||    
T  30827093 cgtttgagtgctaacgtgcctgcatgcacctttcgttccac 30827053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 26977861 - 26977709
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| ||||||| |  ||||||||||||||| ||  |||||||| ||||||||| ||||||||||||| ||||||    |||||||||||||||||    
T  26977861 gcgcctatataagggtcaaattgcttcaccctcaaggt--atgattcatttttcacaatactttctacacactctttctcggttccattactgacttgag 26977764  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  26977763 cgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatc 26977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 16030575 - 16030364
Alignment:
Q  24 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaat---tatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgta 120  Q
    |||| ||||||||||| |||||||||||||  |||||   ||| |   |||||||| | |||||||| |||||||| ||| ||||| ||||||| ||  |    
T  16030575 gtgttctctaaccgctccctaatcacacgccacaaaatccggagtagttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggt--a 16030478  T
Q  121 tgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    ||||||||||||||||||||||||||||||| |||  | |  |||||||||||||||||| || || || ||||||||||||||||||||||| ||||||    
T  16030477 tgattcacttttcacaacactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccac 16030378  T
Q  221 cgcgaagactcatc 234  Q
    || |||||||||||    
T  16030377 cgtgaagactcatc 16030364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 25 - 285
Target Start/End: Complemental strand, 5671950 - 5671688
Alignment:
Q  25 tgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcac-gagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 119  Q
    |||||||| |||||| |||||||||||| |||||||||||||     |||| ||||  | ||| |||| |||| |||||||  ||||||| ||||  |||    
T  5671950 tgtcctcttaccgct-cctaatcacacgatgcaaaacttggacgtggttattttcaatgcgcgtctatataagagtgacttaacttcaccttcaa--tgt 5671854  T
Q  120 atgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||||||||||||||||||||||||||||| |||||| |  ||||||||| |||||||||||||||||||||||||||| || |||||||| | ||||    
T  5671853 atgattcacttttcacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcctacaaacaccttttgctcca 5671754  T
Q  220 ccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcac 285  Q
     || | |||||||||  | || |  |||||||| |||| |||   ||||||||| |||||||||||    
T  5671753 gcgggcagactcatcgccaccgtatcagagcattttccaccactgttgcctctcgtccatcctcac 5671688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 83 - 234
Target Start/End: Complemental strand, 16050512 - 16050363
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||| | |||||||| |||||| ||  ||| |||||||||||| ||||||||||||||| |||||| |  ||||| | ||||||||||||    
T  16050512 cctatataagggtggcattgcttcatcctcaaggt--atggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 16050415  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||||    
T  16050414 tggagtgctaacgtgcctgcagatacctttctatccaccgcgaagactcatc 16050363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 117 - 296
Target Start/End: Original strand, 5459714 - 5459892
Alignment:
Q  117 tgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgtt 216  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |  ||| ||||||  |||| ||||||||||||||||| ||||||  ||||||||||     
T  5459714 tgtatgattcactttacacaacactttctacacactctttctcag-tccgttactgttttgaacgttggagtgctaacgtacctgcatgcacctttcgtc 5459812  T
Q  217 ccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactggacagatca 296  Q
    ||||| ||||||||||||  | || | |||||||| ||||||||| | | ||||||||||||||||||| ||| ||||||    
T  5459813 ccaccacgaagactcatcgccaccgtaccagagcacattccgccatcgtcgcctctcatccatcctcaccggatagatca 5459892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 34273205 - 34273059
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||| ||| ||||||||||||||| ||  |||| ||||||| ||||||||||||||||||| |||||| |  ||| |||||||||||||| |    
T  34273205 cctatataagggcgacattgcttcaccctcaaggt--atgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcat 34273108  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    |||||||||||||||| |||||  ||||||||| ||||||| |||||||    
T  34273107 tggagtgctaacgtgcttgcaggtacctttcgtcccaccgcaaagactc 34273059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 12177471 - 12177364
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||| ||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||| || ||||||||||||||| || || ||||||||||||    
T  12177471 gtataattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttc 12177372  T
Q  218 caccgcga 225  Q
    ||||||||    
T  12177371 caccgcga 12177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 22414859 - 22414744
Alignment:
Q  119 tatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcc 218  Q
    |||||||||||||||||||||||||||||||||  ||| | |  | ||||||||||||||||||  |||||||||||||||||| | |||||||||||||    
T  22414859 tatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttcc 22414760  T
Q  219 accgcgaagactcatc 234  Q
    ||||| ||||||||||    
T  22414759 accgcaaagactcatc 22414744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 33101519 - 33101629
Alignment:
Q  124 ttcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||||||||||||||||||||  ||||| |  |||||||| ||||||||||||||||||||||||||||||||  |||||||| ||| || ||    
T  33101519 ttcacttttcacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatgcacctttcattctacagc 33101618  T
Q  224 gaagactcatc 234  Q
    |||||||||||    
T  33101619 gaagactcatc 33101629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 2140927 - 2141066
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||||| ||||||||||||| ||  ||| |||||||| ||||||||||||||||||  |||| || |    |||||||||||||||||||||||    
T  2140927 taagggtgacttagcttcaccctcaaggt--atggttcactttccacaacactttctacacattcttttttca----attactgacttgagcgttggagt 2141020  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||  |||||||| ||||||||||||| |||| ||||| |||||    
T  2141021 gctaagttgcctgcatacacctttcgttctaccgtgaagattcatc 2141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 18246254 - 18246075
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    ||||||||||||  |||||||||||| ||  |||| ||||||||| || |||||| || |||| |||||| || || | |||| ||||||||||||||||    
T  18246254 taagggtgacttatcttcaccctcaaggt--atgaatcacttttctca-cactttttatacactctttctcaattctaatactcacttgagcgttggagt 18246158  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctc 271  Q
    | |||||||| | |||||||||||||||||||||| ||||||||||  | || | |||||| || |||||||| | |||||||    
T  18246157 gttaacgtgcttacagacacctttcgttccaccgccaagactcatcaccaccgtaccagagtatcttccgccatcgttgcctc 18246075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 52565681 - 52565549
Alignment:
Q  100 ttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcc 199  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| | ||| |||| | |  ||| ||||||||||||||||  ||||||||||||| |    
T  52565681 ttgcttcaccctcaa-gt-tatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtc 52565584  T
Q  200 tgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||| |||||||||||||| | |||| |||||||    
T  52565583 tgcaggcacctttcgttccatcacgaaaactcatc 52565549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 4601540 - 4601605
Alignment:
Q  165 cattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  4601540 cattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagact 4601605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 1659802 - 1659899
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    ||||||||||||||||||  ||||||  |||||| |  ||||||| ||||||||||||||||||| |||||||  || ||||||||||||||||||||    
T  1659802 tcacttttcacaacacttcttacacattctttctcagatccattattgacttgagcgttggagtgataacgtgtatgtagacacctttcgttccaccg 1659899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 14255051 - 14255152
Alignment:
Q  133 cacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    ||||||||||  ||||||| |||||| |  | ||||| |||||||||||||||||||||| ||||| ||||| |||| ||||||||||| ||||||||||    
T  14255051 cacaacacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactca 14255150  T
Q  233 tc 234  Q
    ||    
T  14255151 tc 14255152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 23728833 - 23728941
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||| |||||| |  ||||||| ||||||||||||   | ||||||||||||||||  ||||||||||| |||||||    
T  23728833 tcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatccacctttcgtt-caccgcg 23728931  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  23728932 aagactcatc 23728941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 25408174 - 25408066
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||| || | | |  | |||||||||||||||| |||||||||||||||| |||||| |||||||| |||||||||     
T  25408174 tcacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccaccgca 25408075  T
Q  225 aagactcat 233  Q
     ||||||||    
T  25408074 gagactcat 25408066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 23280273 - 23280367
Alignment:
Q  123 attcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    ||||||||||||||||||| |  ||||||||||||| |  ||||||||||||||||| ||| ||||| |||| || |||||| ||||||||||||||    
T  23280273 attcacttttcacaacactat--acacacactttctcagttccattactgacttgagagtttgagtgataacatgtctgcaggcacctttcgttcca 23280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 43344449 - 43344564
Alignment:
Q  117 tgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgtt 216  Q
    ||||||||||||||||| |  |||||| ||||||| |||||| |  | || |||||||||||||||| ||||||||||||  ||||||||||||||| |     
T  43344449 tgtatgattcacttttcccc-cactttttacacactctttct-agtttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatc 43344546  T
Q  217 ccaccgcgaagactcatc 234  Q
    ||||||| ||||||||||    
T  43344547 ccaccgcaaagactcatc 43344564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 21098896 - 21098956
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||    
T  21098896 tccattactgacttgatcgtcggagtgctaatgtgcctgcagccacctttcgttccaccgc 21098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 48637591 - 48637519
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc-gaagactcatc 234  Q
    ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||| ||||| |||||||||||    
T  48637591 tccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatc 48637519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 8018984 - 8018918
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||| | |||||||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  8018984 tactgacttgagcgtcgtagtgctaacgtgcctgtagatacctttcgtcccaccacgaagactcatc 8018918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 16299591 - 16299695
Alignment:
Q  129 ttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaaga 228  Q
    ||||||||||||||  ||| ||| |||||| |  | ||||||| |||||| ||| |||||||||| |||| ||||||||| |||||||||||||| ||||    
T  16299591 ttttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aaga 16299689  T
Q  229 ctcatc 234  Q
    ||||||    
T  16299690 ctcatc 16299695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 21682641 - 21682712
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||||||||||||||| ||||| |||  || ||||||||||||||| ||  |||||||||    
T  21682641 tccattactgacttgagcgttggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatc 21682712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 16522825 - 16522759
Alignment:
Q  153 ctttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||| || ||| ||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  16522825 ctttctcaattcctttattgacttgaacgttgaagtgctaacgtgccttcagacacctttcgttcca 16522759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 2612714 - 2612782
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    |||| ||||||||||||||||  | | |||||||| |||||||||||||||||||| |||| |||||||    
T  2612714 tccaatactgacttgagcgtttcaatactaacgtgtctgcagacacctttcgttcctccgcaaagactc 2612782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 3590867 - 3590811
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||||||||||||| ||| |||||||||| |||||||||  ||||||||||||||    
T  3590867 tccattactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttcgttcca 3590811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 46016149 - 46016096
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    |||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  46016149 tactgatttgatcgtcggagtgctaacgtgcctgca-acacctttcgttccaccg 46016096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 30732549 - 30732501
Alignment:
Q  171 tgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||||||| ||||||||||||||||||||||| |||| | |||||||    
T  30732549 tgacttgagcattggagtgctaacgtgcctgcaggcaccctccgttcca 30732501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 12032223 - 12032298
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 158  Q
    |||||||| |||||||||||| | |||||| |||| || ||||||||| ||| ||||||||||||||||||| ||||||    
T  12032223 gcgcctatataagggtgacttagtttcacc-tcaa-gt-tatgattcattttacacaacactttctacacactctttct 12032298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 16050332 - 16050278
Alignment:
Q  244 ccagagcatattccgccaacattgcctctcatccatcctcactggacagatcaat 298  Q
    ||||||||| ||| |||| |||||||||||||||||| |||| ||||| ||||||    
T  16050332 ccagagcatcttctgccaccattgcctctcatccatcatcaccggacatatcaat 16050278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 30477761 - 30477611
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagc 180  Q
    ||||||| |||||||||| || |||||||||||| ||  |||||||||||||||||||||||||||||||| |||||| |  | | ||||||||||||||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttctcagtttcgttactgacttgagc 30477664  T
Q  181 gttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcat 233  Q
    |||||||||||||||||| |||||||| |||||||  |||||||||| |||||    
T  30477663 gttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcat 30477611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 18323062 - 18322915
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||||||||| |||||||| ||||||  ||||||||||||||||||||||| ||||||||||  |||||| |  || ||||||||||||||||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaa--tgtatgattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcg 18322965  T
Q  182 ttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    |||||||| |||| || |||||  ||||||| ||||||||||||||||||    
T  18322964 ttggagtgttaacatgtctgcatgcaccttttgttccaccgcgaagactc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 24507542 - 24507427
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    ||||||||||||||||||||||||||||| |||| |||||| |  ||||||| |||||||| ||||||||| ||||||||| ||||||||||||||| ||    
T  24507542 gtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttgatcgttggagtactaacgtgcatgcagacacctttcgctc 24507443  T
Q  218 caccgcgaagactcat 233  Q
    |||||| |||||||||    
T  24507442 caccgcaaagactcat 24507427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 23497059 - 23497194
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga----attatcttcacgagcgcctatgtaagggtgactttgct 104  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||  |||    ||||||||||||||||||||| ||||||||||||||||    
T  23497059 aggatcaccctgcatgtgtcctctaaccgctccctaatcacacg-tgcaaaacccggagacaattatcttcacgagcgcctatataagggtgactttgct 23497157  T
Q  105 tcaccctcaaagtgtatgattcacttttcacaacacttt 143  Q
    | ||||||||   |||||||||||| |||||||||||||    
T  23497158 taaccctcaa--ggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 138 - 288
Target Start/End: Complemental strand, 23269311 - 23269161
Alignment:
Q  138 cactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttc 237  Q
    |||||||||||||| |||| | |  |||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||  |    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgcc 23269212  T
Q  238 ccccttccagagcatattccgccaacattgcctctcatccatcctcactgg 288  Q
     || | ||||||||| |||||| |  ||||||||| |||||| ||||||||    
T  23269211 accgtaccagagcattttccgcaactattgcctcttatccatactcactgg 23269161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 13754877 - 13754730
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||| ||||||| ||||||||||||| ||  | |||||||||| ||||||||||||||||||| |||||| |  | |||||||||||||||||    
T  13754877 gcctatataagagtgacttagcttcaccctcaaggt--aggattcactttacacaacactttctacacactctttctcagtttcattactgacttgagcg 13754780  T
Q  182 ttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
     || |||| ||||||||| |||| |||||||||| |||  ||||||||||    
T  13754779 atgtagtgttaacgtgccagcaggcacctttcgtcccattgcgaagactc 13754730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 3459454 - 3459604
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcac-aacactttctacacacactttcttaactccattactgacttga 178  Q
    |||||||| |||||||||  |||||||||| |||| ||  | |||| ||||||||| |||||||||||||||| ||| || |  ||||||||||||||||    
T  3459454 gcgcctatataagggtgaacttgcttcacc-tcaaggt--acgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttga 3459550  T
Q  179 gcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcat 233  Q
    |||  ||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  3459551 gcgccggagtgctaacgtgcctgcaggcacctttcg-cccaccgcgaagactcat 3459604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 17698255 - 17698387
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| || ||||| | |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||    |||||||||||||||      
T  17698255 gcgcctatatatgggtggccttgcttcaccctcaaagtata--attcacttttcacaacactttctacacactctttctcggttccattactgacttgca 17698352  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcg 214  Q
     |||||| ||||||||| || ||||||||||||||    
T  17698353 tgttggaatgctaacgtacccgcagacacctttcg 17698387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 13765116 - 13764961
Alignment:
Q  74 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactga 173  Q
    ||||| |||| ||| |||||||||||| |||||||| ||||     || ||||||||| ||||||||||||||||||| |||||| |  | ||||||| |    
T  13765116 tcacgcgcgcttatttaagggtgacttagcttcaccttcaagac--attattcactttacacaacactttctacacactctttctcagtttcattactca 13765019  T
Q  174 cttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    ||||| | |||||||  |||||||||||||||||||||||||  ||||||||||||||    
T  13765018 cttgaacattggagtcttaacgtgcctgcagacacctttcgtcacaccgcgaagactc 13764961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 296
Target Start/End: Original strand, 26916868 - 26917082
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||| ||| ||||||||  ||||| ||  |||| ||||||||||||||||||||||||||| || ||| |  |||||||||||||||||    
T  26916868 gcgcctatataagggcgacattgcttcatgctcaaggt--atgactcacttttcacaacactttctacacactctctctcagttccattactgacttgag 26916965  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccat 279  Q
    |||| | | ||||||||||||  |  |||||||||||||| | ||||||||| ||  | |  | | |||||   ||| |||| | |||||||||||||||    
T  26916966 cgttagtgcgctaacgtgcctaaatgcacctttcgttccatcacgaagactcgtcgccactgtactagagccctttctgccaccgttgcctctcatccat 26917065  T
Q  280 cctcactggacagatca 296  Q
    |||||| ||||| ||||    
T  26917066 cctcaccggacatatca 26917082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 89 - 296
Target Start/End: Complemental strand, 15058147 - 15057943
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||| ||||| ||| ||||||||||| ||  |||||| | ||||||| ||||||||||||||   ||||| || | ||||||| ||||| |||||| |||    
T  15058147 taagtgtgacgttgtttcaccctcaaggt--atgatttatttttcaccacactttctacacattttttctcaatttcattactaacttgtgcgttgtagt 15058050  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactgg 288  Q
    |||||||||||||||  |||||||||||||||| | |||||||||| || || | |  || ||  ||||| ||   ||||||||||||||||||||||||    
T  15058049 gctaacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcaccgtactgga-cactttccgtcactgttgcctctcatccatcctcactgg 15057951  T
Q  289 acagatca 296  Q
    ||| ||||    
T  15057950 acatatca 15057943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 21416849 - 21416709
Alignment:
Q  90 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtg 189  Q
    ||||||||  |||||||||||| || ||  | |||||| ||||||||||||||||||||||| |||||| |  | |||||||||||||||||| ||||||    
T  21416849 aagggtgaacttgcttcacccttaaggt--acgattcatttttcacaacactttctacacactctttctcagtttcattactgacttgagcgtcggagtg 21416752  T
Q  190 ctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    |||||| || ||||||||||||  | |||| |||||| |||||    
T  21416751 ctaacgagcatgcagacaccttcagatccatcgcgaatactca 21416709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 89 - 297
Target Start/End: Original strand, 17927683 - 17927889
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||| | |||||||||||| || ||  ||||||||| ||||| ||||||||||||| || |  ||| |  |||||||||||||| |||||||||||    
T  17927683 taagggtggcattgcttcacccttaaggt--atgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagt 17927780  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactgg 288  Q
    |||||||||| ||||  |||||||||| ||||| | |||| |||||  | || | | ||| ||  |||||||| |  ||||||| ||||||||||||  |    
T  17927781 gctaacgtgcatgcatgcacctttcgtcccaccacaaagagtcatcgccaccatactagaacactttccgccatcgctgcctctaatccatcctcaccag 17927880  T
Q  289 acagatcaa 297  Q
    |||||||||    
T  17927881 acagatcaa 17927889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 6928096 - 6928174
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgt 196  Q
    |||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||| |||| | |||||||||    
T  6928096 gtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgttgaaatgctaacgt 6928174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 5859936 - 5859814
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||| ||||||||  ||||| ||  | ||||||||| ||| |||||| || ||||||  |||||||  ||||||| |||||||||    
T  5859936 gcgcctatataagggtgaccttgcttcaatctcaaggt--acgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttgag 5859839  T
Q  180 cgttggagtgctaacgtgcctgcag 204  Q
    |||||||||||||||||| ||||||    
T  5859838 cgttggagtgctaacgtgtctgcag 5859814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 24576598 - 24576691
Alignment:
Q  127 acttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    ||||||||||||||||  ||||||| | || |||  ||||||||||||||||||||  ||||| |||||||||||||| |||||||||||||||    
T  24576598 acttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttccac 24576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 24070936 - 24070866
Alignment:
Q  119 tatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtg 189  Q
    |||||||||||| |||||||||||||||||||| ||||||||  |||||||||||||| || |||||||||    
T  24070936 tatgattcacttctcacaacactttctacacactctttcttagttccattactgacttaagtgttggagtg 24070866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 14666890 - 14666950
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||| |||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  14666890 tccattattgacttgatcgtcggagtgctaacgtgcctgcaggcaccttttgttccaccgc 14666950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 20055603 - 20055548
Alignment:
Q  179 gcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  20055603 gcgtcggagtactaacgtgcctgcagacacccttcgttccaccgcgaagattcatc 20055548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 23497201 - 23497304
Alignment:
Q  178 agcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatcc 277  Q
    ||||||||||||||||| ||| |||||| |||||||||||||| || ||||||||||  | || | || ||| || ||||||||   |||||||||||||    
T  23497201 agcgttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccgtacctgagtattttccgccactgttgcctctcatcc 23497300  T
Q  278 atcc 281  Q
    ||||    
T  23497301 atcc 23497304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 24677638 - 24677709
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||| ||||||||||||| ||||||||||||| ||| ||||| |||| |||||| ||||| |||||||||||    
T  24677638 tccaatactgacttgagcattggagtgctaacatgcttgcagccacccttcgtttcaccgtgaagactcatc 24677709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 4565446 - 4565504
Alignment:
Q  165 cattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||| ||||||  || ||||||||||| ||||||||||||||||||||||||||||    
T  4565446 cattactaacttgattgtcggagtgctaacatgcctgcagacacctttcgttccaccgc 4565504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 11776298 - 11776358
Alignment:
Q  175 ttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatct 235  Q
    |||||||| |||||||||||||||||||| ||| ||||||| ||||||| || ||||||||    
T  11776298 ttgagcgtcggagtgctaacgtgcctgcaaacatctttcgtcccaccgcaaatactcatct 11776358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 1909761 - 1909827
Alignment:
Q  165 cattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    |||||||||||| ||||||| | |||||||||| |||||  ||||||||||||||| || |||||||    
T  1909761 cattactgactttagcgttgaaatgctaacgtgtctgcatgcacctttcgttccactgcaaagactc 1909827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 8490046 - 8490093
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgtt 216  Q
    ||||||||| ||||||||||  |||||||| |||||||||||||||||    
T  8490046 actgacttgggcgttggagtattaacgtgcttgcagacacctttcgtt 8490093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 148
Target Start/End: Complemental strand, 7220647 - 7220617
Alignment:
Q  118 gtatgattcacttttcacaacactttctaca 148  Q
    |||||||||||||||||||||||||||||||    
T  7220647 gtatgattcacttttcacaacactttctaca 7220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 17319698 - 17319744
Alignment:
Q  188 tgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||| ||||||||  |||||||||||||||| ||||||||||||    
T  17319698 tgctaacatgcctgcatgcacctttcgttccaccacgaagactcatc 17319744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 6927989 - 6928045
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga 66  Q
    |||||||| || || ||||||||| |||| ||||||||||||||||||||||| ||||    
T  6927989 aggatcactctacacgtgtcctcttaccg-ttcctaatcacacgctgcaaaacctgga 6928045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 22454290 - 22454351
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    ||||||||| |||||||||||| ||||||||| ||| |||| | |||||||| | |||||||    
T  22454290 actgacttgggcgttggagtgccaacgtgcctacaggcaccctccgttccactgtgaagact 22454351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 80 - 296
Target Start/End: Complemental strand, 30681113 - 30680899
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| ||| |||||| |||||||| |||||| ||  |||||||||||||||||| || |||||||| | |||| | |  | |||||||||||||||    
T  30681113 gcgcctatctaaaggtgacattgcttcatcctcaaggt--atgattcacttttcacaatacattctacacgctctttatcagtttcattactgacttgag 30681016  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccat 279  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| | || | || |||||  | |||||| | |||  ||| ||||||    
T  30681015 cgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatctccaccttaccggagcacctcccgccaccgttgtttcttatccat 30680916  T
Q  280 cctcactggacagatca 296  Q
    |||||||||||| ||||    
T  30680915 cctcactggacatatca 30680899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 19305585 - 19305434
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||| || |  |||||||||||||||||    
T  19305585 gcgcctatttaagggtgaccttgcttcaccctcaaggt--atgattcacttttcacaacactttctacacactcttactcagttccattactgacttgag 19305488  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcat 233  Q
    ||||  |||||||||||||||  ||  ||||||||||||||||| |||| ||||    
T  19305487 cgtttaagtgctaacgtgcctctaggaacctttcgttccaccgcaaagattcat 19305434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 83 - 234
Target Start/End: Complemental strand, 18147424 - 18147275
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||    ||||||| ||||||||||||    
T  18147424 cctatataagggtgacattgcttcaccct-aaag-gtatgagtcacttttcacaacactttctacacactctttctcggttccattagtgacttgagcgt 18147327  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||| |||||| ||| ||| ||||||||||| ||||| |||||||||||    
T  18147326 tggagtgttaacgttcctacaggcacctttcgtttcaccgagaagactcatc 18147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 20148434 - 20148289
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||||||||| |||||||||| |||| ||  |||||||||||||||||||||||||||||| |  ||||| || ||||||||| |||||||||    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggt--atgattcacttttcacaacactttctacactc--tttctcaattccattactaacttgagcg 20148339  T
Q  182 ttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
     ||||||||||||||| |||||  ||| |||||||||||||| |||||||    
T  20148338 atggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactc 20148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 22184394 - 22184539
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||||||||| |||||||||| |||| ||  |||||||||||||||||||||||||||||| |  ||||| || ||||||||| |||||||||    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggt--atgattcacttttcacaacactttctacactc--tttctcaattccattactaacttgagcg 22184489  T
Q  182 ttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
     ||||||||||||||| |||||  ||| |||||||||||||| |||||||    
T  22184490 atggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactc 22184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 34572964 - 34573094
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| ||||||||||||  ||||||||||||  ||||||||||||||||||| |||||||||||||||  |||||||  || |||||| |||||||    
T  34572964 gcgcctatataagggtgacttaacttcaccctcaa--tgtatgattcacttttcaccacactttctacacactttttcttagttctattactaacttgag 34573061  T
Q  180 cgttggagtgctaacgtgcctgcagacaccttt 212  Q
    |||||||||  ||| ||| ||||||||||||||    
T  34573062 cgttggagtattaatgtgtctgcagacaccttt 34573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 12449596 - 12449705
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||| ||||||||||  ||||||| |||| | | |||||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||| ||    
T  12449596 tcactttccacaacacttcttacacactctttttcagctccattactgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacg 12449695  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  12449696 aagactcatc 12449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 34187372 - 34187272
Alignment:
Q  130 tttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagac 229  Q
    |||||| ||||||| ||||||| |||||| |  ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  34187372 tttcaccacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttccaccgcaaagac 34187273  T
Q  230 t 230  Q
    |    
T  34187272 t 34187272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 31295506 - 31295654
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagc 180  Q
    |||||||||||||||||  ||||||||||||| | ||  ||   ||||||||||||||||||  ||||||| |||||| |  | ||||||||||||||||    
T  31295506 cgcctatgtaagggtgaacttgcttcaccctcgaggtacata--tcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagc 31295603  T
Q  181 gttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    || | ||||||||| ||||||||| || ||||||||||||| |||||||||    
T  31295604 gtcgaagtgctaacatgcctgcaggcaactttcgttccacctcgaagactc 31295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 3404772 - 3404984
Alignment:
Q  24 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 119  Q
    ||||||||||||| || | |||||||||||||||||||   ||     |||| |||||  |||||||| ||||||| | ||  |||||||||||| ||      
T  3404772 gtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctatataagggtaatttaacttcaccctcaaggt-- 3404869  T
Q  120 atgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||||| ||||||||||||||||||||||| |||||| |  |||||||||||||| || ||| ||||| ||| |||||| ||||||| ||||||  ||    
T  3404870 atgattcatttttcacaacactttctacacactctttctcagttccattactgacttaagtgttagagtgttaatgtgcctacagacacatttcgtctca 3404969  T
Q  220 ccgcgaagactcatc 234  Q
      |||||||||||||    
T  3404970 ttgcgaagactcatc 3404984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 19331695 - 19331799
Alignment:
Q  127 acttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 226  Q
    ||||| |||||||||||||| || | ||||||||  |||||||||||||| ||||| ||||| ||||||| ||||||  |||||||||||||||||||||    
T  19331695 actttacacaacactttctatactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcgaa 19331794  T
Q  227 gactc 231  Q
    |||||    
T  19331795 gactc 19331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 33596982 - 33596841
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||| ||||  |||||||| |||||| ||  |||||||  |||||||||||||||||||||||  |||||||  | ||||||||| |||||    
T  33596982 gcgcctatataagagtgaacttgcttcatcctcaaggt--atgattccattttcacaacactttctacacactttttcttagtttcattactgagttgag 33596885  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||| ||||| ||| ||||||||||  |||||||||||||||||    
T  33596884 cgttagagtgttaatgtgcctgcaggtacctttcgttccaccgc 33596841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 689867 - 689958
Alignment:
Q  122 gattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttc 213  Q
    |||||||||||||||||||||| |||||||||||||| |  |||||||||||||||||| ||| |||||||| || |||||| |||||||||    
T  689867 gattcacttttcacaacactttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacctgcaaacacctttc 689958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 22572128 - 22572018
Alignment:
Q  119 tatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcc 218  Q
    ||||||||||||| |||||||| |||||||||| |||| | || |||||||||||| |||||||   ||||||||||||||||||| ||||||| |||||    
T  22572128 tatgattcactttacacaacaccttctacacactcttt-tcaattccattactgacatgagcgtcatagtgctaacgtgcctgcagccaccttttgttcc 22572030  T
Q  219 accgcgaagact 230  Q
    || |||||||||    
T  22572029 acggcgaagact 22572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 9291984 - 9292138
Alignment:
Q  74 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactga 173  Q
    ||||| |||||||| ||| ||||| || ||||||||||||| ||  |||||||||||||| || |||||| |||| ||  ||||| |  |||| ||||||    
T  9291984 tcacgtgcgcctatataaaggtgagttagcttcaccctcaaggt--atgattcacttttccca-cactttttacatactatttctcagttccaatactga 9292080  T
Q  174 cttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    |||||||||| | |||||||||||| ||||| |||||||||||||||||  |||||||    
T  9292081 cttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccaccgtaaagactc 9292138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 34064316 - 34064165
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  |    ||||||||||||||||||  ||||||| ||||||||  | ||||||||||||||     
T  34064316 gcgcctatataagggtgaacttgcttcaccctcaaggtacaca--tcacttttcacaacacttcttacacactctttcttagtttcattactgacttgaa 34064219  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcat 233  Q
    |||   |||| ||||||||||||| ||||||||||||| |||| ||||||||||    
T  34064218 cgtcatagtgttaacgtgcctgcacacacctttcgttctaccgtgaagactcat 34064165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 9277280 - 9277419
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    ||||||||| || ||||||||||||| ||  |||||||||||| | | ||||||| |||| || |||||| |  |||| ||||||||||||||||  |||    
T  9277280 taagggtgagttagcttcaccctcaaggt--atgattcacttt-ctccacactttttacatactctttctcagttccaatactgacttgagcgttatagt 9277376  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    ||||||||| ||||||  ||||||||||||||||| |||||||    
T  9277377 gctaacgtgtctgcaggaacctttcgttccaccgcaaagactc 9277419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 16343619 - 16343548
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| |||||||||||||    
T  16343619 tccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccactgcgaagactcatc 16343548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 22497349 - 22497420
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||||||| |||||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  22497349 tccattactgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttccatcgcgaagactcatc 22497420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 11087587 - 11087473
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||||||||||||||||||  |||||| || |||||| |  | |||||||||||| || ||   |||||||| ||| ||||||||| |||||||||    
T  11087587 gtatgattcacttttcacaacacaatctacatactctttctcagttacattactgacttaagggtcaaagtgctaatgtgtctgcagacagctttcgttc 11087488  T
Q  218 caccgcgaagactca 232  Q
    |||||||||||||||    
T  11087487 caccgcgaagactca 11087473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 15480314 - 15480440
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||||||| ||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||||| |  | ||||| ||||||||| ||    
T  15480314 cctatataagggtgacttagcttcactctcaaggt--atgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgagagt 15480411  T
Q  183 tggagtgctaacgtgcctgcagacacctt 211  Q
    | ||||| |||| ||| ||||| ||||||    
T  15480412 tcgagtgataacttgcttgcaggcacctt 15480440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 14268551 - 14268440
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||||||||||| |||||||||   | |  |||||||||||||||| ||||||||||||||||  | |||||  |||||||||||||| ||||    
T  14268551 gcctatataagggtgacttagcttcacccctcacga-tatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttcagcg 14268453  T
Q  182 ttggagtgctaac 194  Q
    |||||||||||||    
T  14268452 ttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 14080567 - 14080466
Alignment:
Q  119 tatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcc 218  Q
    |||||||||||||||||||||||| |||||||| ||||| | | | ||||||| ||||||||||  ||||||||| ||||||| || |||||||||| ||    
T  14080567 tatgattcacttttcacaacacttactacacactctttc-tcagttcattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtccc 14080469  T
Q  219 acc 221  Q
    |||    
T  14080468 acc 14080466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 25008398 - 25008498
Alignment:
Q  119 tatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcc 218  Q
    ||||||||||||| | || |||||| ||||||| |||||| || ||||||||||||||||||||||||||| |||||||||  ||  |||||||||| ||    
T  25008398 tatgattcactttaccca-cactttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgccgacatgcacctttcgtccc 25008496  T
Q  219 ac 220  Q
    ||    
T  25008497 ac 25008498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 4251029 - 4251133
Alignment:
Q  95 tgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaac 194  Q
    ||||||||||||||||||||  |  |||||| ||||||||||||||| ||| ||||| |||||| |  | |||||||||||||| |||||||||| || |    
T  4251029 tgactttgcttcaccctcaagat--atgatttacttttcacaacactctctccacactctttctcattttcattactgacttgaacgttggagtgttatc 4251126  T
Q  195 gtgcctg 201  Q
    |||||||    
T  4251127 gtgcctg 4251133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 12203568 - 12203683
Alignment:
Q  40 tcctaatcacacgctgcaaaacttggaattatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaaca 139  Q
    |||| |||||| ||||||||||| | |   |||| |||||| || | | ||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  12203568 tcctgatcacatgctgcaaaactcgaagacatctccacgagtgcgtgtataagggtgacttaacttcaccctcaaagt--atgattcacttttcacaaca 12203665  T
Q  140 ctttctacacacactttc 157  Q
    ||||||||| || |||||    
T  12203666 ctttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 27860918 - 27861057
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    ||||||||  ||||||||  ||||||||||||||||||  |    ||||||||||||||||||  ||||| | || | | |  |||||||||||||||||    
T  27860918 gcgcctataaaagggtgaacttgcttcaccctcaaagtacaca--tcacttttcacaacacttcttacactctctctttcagttccattactgacttgag 27861015  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
     ||| |||| ||||| ||||||||||||||||| ||||||||    
T  27861016 tgttagagtactaacatgcctgcagacaccttttgttccacc 27861057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 15104323 - 15104385
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||||||||    | ||||||||||||||||||||||| ||||||||||||||||    
T  15104323 tactgacttgagcgttggagt----atgtgcctgcagacacctttcgttctaccgcgaagactcatc 15104385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 2908017 - 2907878
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||||| | |||||| |||||||  | ||||||| |||| || ||| || | ||||| |||||| || |||| || ||| ||||||||| | ||    
T  2908017 taagggtgacttagattcaccttcaaagt--acgattcacctttcgca-cacgttttgcacaccctttctcaattccaataatgatttgagcgttagcgt 2907921  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactc 231  Q
    ||||||||| ||||||||||||||||||  |||||||| ||||    
T  2907920 gctaacgtgactgcagacacctttcgttttaccgcgaaaactc 2907878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 19730604 - 19730710
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||| ||| ||||||  ||||||| |||||| |  ||||||| |||||||||||||||||||||||| ||||||||  || ||||  ||||||| ||    
T  19730604 tcactttacacgacacttcttacacactctttctcagttccattattgacttgagcgttggagtgctaacatgcctgcatgca-ctttacttccaccacg 19730702  T
Q  225 aagactca 232  Q
    ||||||||    
T  19730703 aagactca 19730710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 12424328 - 12424422
Alignment:
Q  126 cacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    |||||||||||||||||| || ||   || ||| |  ||||||||||||||||  || | ||||||||||||||||||| |||||||||||||||    
T  12424328 cacttttcacaacactttttagactttctctctcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccac 12424422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 9403250 - 9403173
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgc 202  Q
    ||||||| ||||||||||  ||||||| |||||| |  ||||||| |||||||||||| ||||| |||||||||||||    
T  9403250 tcactttccacaacacttcttacacactctttctcagttccattattgacttgagcgtcggagttctaacgtgcctgc 9403173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 12488009 - 12488118
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    |||||||||||||||||   ||||||| || | |||  || |||| |||||| |||||| |||||||||||||| ||||  |||| ||||||||||  ||    
T  12488009 tcacttttcacaacactacttacacactctattttagttctattattgacttcagcgttagagtgctaacgtgcatgcatgcacccttcgttccacaacg 12488108  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  12488109 aagactcatc 12488118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 23768230 - 23768162
Alignment:
Q  166 attactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||| ||||||||||||  |||||| | ||||| ||||||||||  ||||||||||||    
T  23768230 attactgacttgagcattggagtgctaatatgcctgtaaacacccttcgttccacgccgaagactcatc 23768162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 10115659 - 10115770
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    |||| ||||| |||||| ||||||||||| | ||  |||||||||||||||||| ||||| ||| | | |||||| |  | |||||||||||||||| ||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggt--atgattcacttttcacaaaactttttactcgctctttctcagtttcattactgacttgagcatt 10115756  T
Q  184 ggagtgctaacgtg 197  Q
    || | |||||||||    
T  10115757 ggggagctaacgtg 10115770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 17380217 - 17380100
Alignment:
Q  81 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagc 180  Q
    ||||||| |||||||||| |||| ||| ||| || ||  | |||||||||||||||||||||| | ||||| |||||| |  || ||||||||||||  |    
T  17380217 cgcctatataagggtgaccttgcgtcaacctgaaggt--aagattcacttttcacaacactttattcacactctttctcagttctattactgacttggac 17380120  T
Q  181 gttggagtgctaacgtgcct 200  Q
     ||||||| ||||| |||||    
T  17380119 attggagtactaacatgcct 17380100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 13823428 - 13823487
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    |||||||||||||||| |||||||||||||||  || |||   |||||||||||||||||    
T  13823428 tccattactgacttgatcgttggagtgctaactagcttgccagcacctttcgttccaccg 13823487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 16131089 - 16130993
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttga 178  Q
    |||||||| ||||||| |  ||| ||||||||||| ||  ||||||||| ||||||||||||||||  |||| |||| | |  ||||||||||||||||    
T  16131089 gcgcctatataagggtaaacttgtttcaccctcaaggt--atgattcacgtttcacaacactttctgtacactctttatcagttccattactgacttga 16130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 14184604 - 14184654
Alignment:
Q  173 acttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    |||||| ||| |||||||||| |||||||||  ||||||||||||||||||    
T  14184604 acttgatcgtcggagtgctaatgtgcctgcaatcacctttcgttccaccgc 14184654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 20148245 - 20148203
Alignment:
Q  254 ttccgccaacattgcctctcatccatcctcactggacagatca 296  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||    
T  20148245 ttccgccatcattgccactcatccatcctcactggacatatca 20148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 22184583 - 22184625
Alignment:
Q  254 ttccgccaacattgcctctcatccatcctcactggacagatca 296  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||    
T  22184583 ttccgccatcattgccactcatccatcctcactggacatatca 22184625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 22692100 - 22692072
Alignment:
Q  206 cacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||||||||||||||||    
T  22692100 cacctttcgttccaccgcgaagactcatc 22692072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 30014756 - 30014688
Alignment:
Q  171 tgacttgagcgttggagtgctaacgtgcctgcagacacctttcgt-tccaccgcgaagactcatcttcc 238  Q
    |||||||| |||| ||||||||||||||||||| |||| |||| | |||||||  |||||||| |||||    
T  30014756 tgacttgaacgttagagtgctaacgtgcctgcaaacacttttcttctccaccgtaaagactcagcttcc 30014688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 89 - 299
Target Start/End: Original strand, 2311813 - 2312021
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||| ||||||||||||||| ||  ||||||||| |||||||||||||||||||||  |||||| || ||| || |||| ||||||||||||||    
T  2311813 taagggtgacattgcttcaccctcaaggt--atgattcacctttcacaacactttctacacattctttctcaaatcccttgctgatttgagcgttggagt 2311910  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactgg 288  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||| ||  | || | || |||||  || |||||   ||||||||||||||| ||||| ||    
T  2311911 gctaacgtatctgcagacacctttcattccaccacgaagactcttcgccaccgtaccggagcactttgcgccactgttgcctctcatccatactcaccgg 2312010  T
Q  289 acagatcaatg 299  Q
    ||| |||||||    
T  2312011 acatatcaatg 2312021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 9801056 - 9801201
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    || |||||||||||||| |    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttctctgttctattactgacttgagtg 9801153  T
Q  182 ttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    || |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  9801154 tt-gagtgctaacgtgcttgcaggcacctttcgttccactgcgaagact 9801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 16704523 - 16704405
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||    
T  16704523 gcgcctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctacactctctttctcaactccattactgacttcag 16704426  T
Q  180 cgttggagtgctaacgtgcct 200  Q
    ||||||| ||| |||||||||    
T  16704425 cgttggaatgccaacgtgcct 16704405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 21342260 - 21342405
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| ||||||| || || ||||||||||||  |||||||||||||||||||||||||||||| |||| |||| | |  ||||||||||||||||||||    
T  21342260 cctatataagggtaaccttacttcaccctcaa--tgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgt 21342357  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    || | || ||||||||||||| | ||||||||| |||||| |||||||    
T  21342358 tgtactgttaacgtgcctgcatatacctttcgtcccaccgtgaagact 21342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 17143755 - 17143869
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||||| |||||||||||||||||    ||||||||| | |    
T  17143755 gtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgcctaagaacacctttcatcc 17143854  T
Q  218 caccgcgaagactca 232  Q
    ||||| |||||||||    
T  17143855 caccgtgaagactca 17143869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 17485608 - 17485744
Alignment:
Q  94 gtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaa 193  Q
    |||| |||||||||||||||| ||  |  ||||| ||| ||||||| | ||||||||| | |||| || ||||||||||||||||||||||| |||||||    
T  17485608 gtgattttgcttcaccctcaaggt--actattcattttacacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaa 17485705  T
Q  194 cgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
     |||||  |||||||||||||||||||||||||||||||    
T  17485706 tgtgcccacagacacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 8122894 - 8123036
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||| ||||||||||||||| ||  ||||||||||||||||||| ||||| ||| |   ||| | || | ||||||||||||||||||||||||    
T  8122894 taagggtgacattgcttcaccctcaaggt--atgattcacttttcacaacgctttcgacatagttttt-tcaatttcattactgacttgagcgttggagt 8122990  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||||||| ||||||||| ||  |||| |||||||||||    
T  8122991 gctaacgtgcctgcatacacctttcattttaccgtgaagactcatc 8123036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 30607058 - 30606931
Alignment:
Q  71 tcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattac 170  Q
    |||| ||| |||||||| |||||||| | || |||||||||||| || ||  ||||||||||||||||||||||||| ||| |||||| || ||||||||    
T  30607058 tcttaacgcgcgcctatataagggtggccttacttcaccctcaaggtata--attcacttttcacaacactttctactcactctttctcaattccattac 30606961  T
Q  171 tgacttgagcgttggagtgctaacgtgcct 200  Q
    |||||||||||||||| ||||||| |||||    
T  30606960 tgacttgagcgttggaatgctaacatgcct 30606931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 1770944 - 1770796
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||| ||  |||||||| |||||| | | ||||| |||||||||||||||||||||||||| ||| || |  ||||||||| ||||||||||    
T  1770944 cctatataagggcgaacttgcttcatcctcaaggcgcatgat-cacttttcacaacactttctacacactcttcctcagttccattactaacttgagcgt 1770846  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
     ||||| ||||| ||| |||||||||||||| ||||||||| ||||||||    
T  1770845 cggagtactaacatgcttgcagacacctttccttccaccgcaaagactca 1770796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 28723784 - 28723895
Alignment:
Q  122 gattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    |||||||||||||||||| ||||||||||| ||||||||  ||||||| |||||||||||||||| ||| |||||||||     ||| ||||||||||||    
T  28723784 gattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgcctattagcacatttcgttccacc 28723883  T
Q  222 gcgaagactcat 233  Q
    ||||||||||||    
T  28723884 gcgaagactcat 28723895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 21649453 - 21649382
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  21649453 tccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatc 21649382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 431327 - 431436
Alignment:
Q  123 attcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 222  Q
    |||||||||||||| ||||||| || ||| |||||| |  ||||||| |||||||||||| | |||||||||||| ||| || |||||||| ||||||||    
T  431327 attcacttttcacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcacctttctttccaccg 431426  T
Q  223 cgaagactca 232  Q
    ||||||||||    
T  431427 cgaagactca 431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 12516263 - 12516158
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||  |||||| |  ||||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||||  |    
T  12516263 tcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcacctttcgtttcaccatg 12516164  T
Q  225 aagact 230  Q
    ||||||    
T  12516163 aagact 12516158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 28715467 - 28715604
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||  ||| ||||||||||| ||  |||||||||||||||||||||||| ||||||| |||||| |  |||||||||||||     ||||||||    
T  28715467 taagggtgatattgtttcaccctcaaggt--atgattcacttttcacaacactttatacacactctttctcagttccattactgact-----gttggagt 28715559  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcat 233  Q
    |||||||||| ||| |||| ||||| || ||||  ||||||||||    
T  28715560 gctaacgtgcatgcggacaactttcatttcaccttgaagactcat 28715604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 1475783 - 1475722
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||    
T  1475783 actgacttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccgtgaagact 1475722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 20622520 - 20622377
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacacttt--ctacacacactttct-taactccattactgacttgagcgttgg 185  Q
    |||||||||  ||||||||||||||| ||  ||||||||||||||||| ||||||  ||||||||  ||||| || ||| |||||||||||||||||       
T  20622520 taagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaccactttatctacacactatttctctatctc-attactgacttgagcgtcaa 20622424  T
Q  186 agtgctaacgtgcctgcagacacctttcgttccaccgcgaagactca 232  Q
    |||| |||| |||||||||  |||||||||| ||| |||||||||||    
T  20622423 agtgttaacatgcctgcaggaacctttcgtttcactgcgaagactca 20622377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 13085082 - 13085189
Alignment:
Q  121 tgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    ||||||||||||||||| |||||||||| |  |||||| |  | ||||| |||||||||||||||| |||| || |||||||||||| ||||| | ||||    
T  13085082 tgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagcgttggaatgcttacatgcctgcagacatctttcatcccac 13085181  T
Q  221 cgcgaaga 228  Q
    | ||||||    
T  13085182 cacgaaga 13085189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 35314178 - 35314236
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 226  Q
    |||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||||||    
T  35314178 tactgacttgagcgttggagtgctaacgtgtctgcaaacaccctccgttccaccgcgaa 35314236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 9007832 - 9007879
Alignment:
Q  168 tactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgt 215  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  9007832 tactgacttgagcgttggagtgttaacgtgcctgcaggcacctttcgt 9007879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 14860069 - 14860221
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| |||||||||  ||||||||||||||| ||  |    ||||||||||||||||||  |||| ||  ||||| |  ||||||||||| |||||    
T  14860069 gcgcctatataagggtgaacttgcttcaccctcaaggtacaca--tcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgag 14860166  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
      |  ||||||||| |||||||||  |||||||||||||||| |||||| |||||    
T  14860167 aatcagagtgctaatgtgcctgcaagcacctttcgttccaccacgaagattcatc 14860221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 12731574 - 12731680
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  || |||| |||||| |  ||||||| |||| ||||||| ||||| ||||| ||  || || |||| ||||||||||| ||    
T  12731574 tcacttttcacaacacttcttatacactctttctcagttccattaatgacgtgagcgtcggagtactaacatggttgtaggcaccattcgttccacctcg 12731673  T
Q  225 aagactc 231  Q
    |||||||    
T  12731674 aagactc 12731680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 13933029 - 13932921
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||||||||||||||||| |||| || |||| ||| | |  || |||||||||||||| |||||| |||| || ||    ||| ||||||||||||    
T  13933029 gtatgattcacttttcacaacattttcaacccacattttatcagttcaattactgacttgagtgttggactgcttacatg---tcaggcacctttcgttc 13932933  T
Q  218 caccgcgaagac 229  Q
    |||| |||||||    
T  13932932 caccacgaagac 13932921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 21652719 - 21652612
Alignment:
Q  126 cacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcga 225  Q
    |||||| || |||||||  ||||||  || |||||  ||||||||||||||||| |||  |||||||| | || ||||| ||| |||||||||||| |||    
T  21652719 cactttccataacacttcttacacattctctcttagttccattactgacttgagagtttaagtgctaatg-gcttgcaggcacgtttcgttccaccacga 21652621  T
Q  226 agactcatc 234  Q
    |||||||||    
T  21652620 agactcatc 21652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 28723668 - 28723719
Alignment:
Q  9 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaa 60  Q
    ||||||||||| |||||||||||||| |||| ||| |||||||| |||||||    
T  28723668 aggatcaccctacatgtgtcctctaatcgctccctgatcacacgttgcaaaa 28723719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 10896133 - 10896103
Alignment:
Q  173 acttgagcgttggagtgctaacgtgcctgca 203  Q
    |||||||||||||||||||||||||||||||    
T  10896133 acttgagcgttggagtgctaacgtgcctgca 10896103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 7743409 - 7743466
Alignment:
Q  173 acttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagact 230  Q
    ||||||||||| |||||||||||||| |||| | |||||||||| ||| | |||||||    
T  7743409 acttgagcgttcgagtgctaacgtgcatgcatatacctttcgtttcactgtgaagact 7743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 12252066 - 12251957
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||| ||  ||||||| |||||| |  | | ||||||||||||| ||  |||||||||| ||||||||  ||||||| || | |  |||    
T  12252066 tcacttttcacaacaattcttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttttgtcctattgcg 12251967  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  12251966 aagactcatc 12251957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 9800984 - 9801031
Alignment:
Q  13 tcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaac 61  Q
    ||||||| ||||||||||||||||| | ||||||||||||| |||||||    
T  9800984 tcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaac 9801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 25495975 - 25495908
Alignment:
Q  166 attactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||| ||  ||||||||||||| |||||| |||||| ||  |||||||||||| |||||    
T  25495975 attactgacttgag-gtcagagtgctaacgtgtctgcaggcaccttacgccccaccgcgaagaatcatc 25495908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 49631553 - 49631513
Alignment:
Q  173 acttgagcgttggagtgctaacgtgcctgcagacacctttc 213  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  49631553 acttgagcgttagagtgttaacgtgcctgcagacatctttc 49631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 119 - 296
Target Start/End: Complemental strand, 7969 - 7792
Alignment:
Q  119 tatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcc 218  Q
    ||||||||||||||||||||||||||||||||| |||||| || | ||||||||| ||||||||| |||||||||||||||| ||  |||||||| ||||    
T  7969 tatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttcc 7870  T
Q  219 accgcgaagactcatcttcccccttccagagcatattccgccaacattgcctctcatccatcctcactggacagatca 296  Q
    |||| |||||||||||  | || |   |||| |  || |||||   ||||||||||||||||||||||||||||||||    
T  7869 accgtgaagactcatcgccaccgtaatagagtacttttcgccacttttgcctctcatccatcctcactggacagatca 7792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 95703 - 95924
Alignment:
Q  7 caaggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaatta--tcttc---acgagcgcctatgtaagggtgacttt 101  Q
    |||||||||| || ||||||||||||||||| | ||||||||||||| |||||||| |||  ||  | |||   ||| | |||||| |||||||||| ||    
T  95703 caaggatcactctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgtt 95801  T
Q  102 gcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctg 201  Q
    |||||||||| || ||  |||||||||||||||||||||||||||| ||| |||||| |  ||||||||| |||||||||||| |||| |||||||||||    
T  95802 gcttcaccctgaaggt--atgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctg 95899  T
Q  202 cagacacctttcgttccaccgcgaa 226  Q
    |||  |||||| || ||||||||||    
T  95900 caggaaccttttgtcccaccgcgaa 95924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 29286 - 29398
Alignment:
Q  120 atgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 219  Q
    |||||||||||||||||||||||||||||| |  || ||||  | |||||||||||||||||||||||||||||| || || ||  ||||||||||||||    
T  29286 atgattcacttttcacaacactttctacactc--ttccttattttcattactgacttgagcgttggagtgctaacatgactccatgcacctttcgttcca 29383  T
Q  220 ccgcgaagactcatc 234  Q
    |||||||||||||||    
T  29384 ccgcgaagactcatc 29398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 14040 - 13901
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||||  ||||||||||||||| ||  ||||||||||| |||||||||||||||||||| |||||| |  | |||||||||||||||| |    
T  14040 cctatataagggtgatcttgcttcaccctcaaggt--atgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagctt 13943  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    |||||| ||||||||| | ||  |||||||||| ||||||||    
T  13942 tggagtactaacgtgcattcatgcacctttcgtcccaccgcg 13901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 6419 - 6281
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| ||||| |||  ||||||||| ||||| ||  | || |||||||||||||||||||||||||||  ||||| |  |||||||||||||||||    
T  6419 gcgcctatataaggatgaacttgcttcacgctcaaggt--acgactcacttttcacaacactttctacacactatttctcagttccattactgacttgag 6322  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    | | | |||||||||||||||||| |||||||| |||||||    
T  6321 cttcgaagtgctaacgtgcctgcaaacaccttttgttccac 6281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 15403 - 15515
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||| | || |||||| |  ||||||||||||| ||||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctagatactctttctcagttccattactgactggagcgt 15500  T
Q  183 tggagtgctaacgtg 197  Q
     ||||||||||||||    
T  15501 cggagtgctaacgtg 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 8583 - 8696
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    ||||||||||||||||||||||||||||||||||  ||| | |  | |||||||||||||||||| | |||||||||||| ||||| ||||||||  |||    
T  8583 gtatgattcacttttcacaacactttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtg-ctgcaaacaccttttattc 8681  T
Q  218 caccgcgaagactca 232  Q
    |||||| ||||||||    
T  8682 caccgcaaagactca 8696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 68774 - 68891
Alignment:
Q  82 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcg 181  Q
    |||||| |||||||||| ||||||| ||||||| ||  ||||||||||||||||||||||||||| || |  ||||| |  ||||||||| |||||||||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggt--atgattcacttttcacaacactttctatactc--tttctcagttccattactaacttgagcg 68869  T
Q  182 ttggagtgctaacgtgcctgca 203  Q
    |||||||||||||||| |||||    
T  68870 ttggagtgctaacgtgtctgca 68891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 10928 - 11026
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||||||||||||||  ||||||| || | | |  ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10928 tcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgcctgcatacaccttttgttccaccgc 11026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 22998 - 22855
Alignment:
Q  89 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagt 188  Q
    |||||||||  ||||||||||||||| ||  | |  ||||||||||||||||||  |||||||  ||||| |  ||||||||||||||||||||  ||||    
T  22998 taagggtgaacttgcttcaccctcaaggtacacg--tcacttttcacaacacttcttacacacgatttctcagttccattactgacttgagcgtcagagt 22901  T
Q  189 gctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||| |||| |||||||||| |||| |||||||| ||||    
T  22900 gctaacgtgcccgcaggcacctttcgtcccactgcgaagacccatc 22855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 379794 - 379685
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||| |||||| |  |||||||||||||| || ||   |||||||||||||||  |  |||||||||||||||||||    
T  379794 tcacttttcacaacacttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccgcg 379695  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  379694 aagactcatc 379685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 120981 - 121122
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||| ||||||||| |||||||||||||||| ||  |    ||||||||||||||||||| ||||||| |||||| |  |||||||||||||| ||    
T  120981 gcgcctatataagggtgaatttgcttcaccctcaaggtacaca--tcacttttcacaacactttatacacactctttctcagttccattactgacttaag 121078  T
Q  180 cgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    | |  |||| ||||||||  |  || |||||||| |||||||||    
T  121079 catcagagtactaacgtgtttctaggcacctttcattccaccgc 121122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 4477 - 4533
Alignment:
Q  165 cattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4477 cattagtgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttccacc 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 10769 - 10840
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||| ||| ||||||||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  10769 tccattactgacttgaacgtcggagtgctaacatgcctacagacacctttcattccaccacgaagactcatc 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 215349 - 215258
Alignment:
Q  126 cacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||||||||||||  ||||||| || | | |  | |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  215349 cacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 215258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 73808 - 73922
Alignment:
Q  118 gtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttc 217  Q
    |||||||| ||||||||||||||||||||| ||| |||| | || ||||||||| | ||||||||  |||||||||| |||||| |  ||||||| ||||    
T  73808 gtatgatttacttttcacaacactttctacgcactctttttcaaatccattactaatttgagcgtcagagtgctaacatgcctgaatgcaccttttgttc 73907  T
Q  218 caccgcgaagactca 232  Q
    |||||| ||| ||||    
T  73908 caccgcaaaggctca 73922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 35337 - 35224
Alignment:
Q  120 atgattcactttt-cacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcc 218  Q
    ||||||||||||| |||||||||||| |||||| |||||| |  ||| ||||||||||||| ||  |||||||||||||||||||  ||| ||||||| |    
T  35337 atgattcactttttcacaacactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgttgc 35238  T
Q  219 accgcgaagactca 232  Q
    ||  ||||||||||    
T  35237 actacgaagactca 35224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 40874 - 40762
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    |||||||||| ||||||| |||||| | || | | |  ||||| |||||||||||||||||||||||||||||||||||  | |||||||||| ||| |     
T  40874 tcacttttcataacacttcctacactctctctttcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttctaccaca 40775  T
Q  225 aagactcatcttc 237  Q
     ||||||||||||    
T  40774 gagactcatcttc 40762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 69281 - 69333
Alignment:
Q  169 actgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 221  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  69281 actgacttgagcgttggagtgctaacgtgcctgcaggcaccttttgttccacc 69333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 212 - 326
Alignment:
Q  80 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgag 179  Q
    |||||||  |||||||||  ||||||||||||||| ||  ||  | |||||||||||||||||  ||||||| |||||| |  |||||||||||||||||    
T  212 gcgcctagataagggtgaacttgcttcaccctcaaggtacattct-cacttttcacaacacttcttacacactctttctcagttccattactgacttgag 310  T
Q  180 cgttggagtgctaacg 195  Q
    ||| ||||||||||||    
T  311 cgtcggagtgctaacg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 20510 - 20618
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    |||||||||| |||| ||||||||||| |||||| |  ||| ||| ||||||||||||  |||||||||| ||  || |  |||||||||||||||||||    
T  20510 tcacttttcataacattttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcgttccaccgcg 20609  T
Q  225 aagactcat 233  Q
    ||| |||||    
T  20610 aagcctcat 20618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 10246 - 10346
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    |||||||||||| ||||||||| |||  |||||  | || | ||| | |||| |||||||||||||||| |||||| ||| |||||||||||||| ||||    
T  10246 tcacttttcacaccactttctaaacaatctttcgcagcttccttattcacttaagcgttggagtgctaatgtgcctacaggcacctttcgttccatcgcg 10345  T
Q  225 a 225  Q
    |    
T  10346 a 10346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 21592 - 21740
Alignment:
Q  84 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgtt 183  Q
    |||||||||||||| |||||||||||||||| ||  |    ||||||| ||||||||||  || |||| || | | |  | || |||||||||||| |||    
T  21592 ctatgtaagggtgaatttgcttcaccctcaaggtacaca--tcactttccacaacacttcttaaacactctctttcagtttcaatactgacttgagtgtt 21689  T
Q  184 ggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    |||||||||||||||| |||| |||  |||||||||| ||  |||||||||    
T  21690 ggagtgctaacgtgcccgcaggcacacttcgttccactgcagagactcatc 21740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 18444 - 18592
Alignment:
Q  83 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgt 182  Q
    ||||| |||||||||||| |||||| || | ||| |||||||||| ||||  | ||||||| ||||||| | ||||||   ||  |||||||||||| ||    
T  18444 cctatataagggtgacttagcttcaacc-cgaag-gtatgattcatttttt-ctacactttgtacacactccttcttattccctatactgacttgagtgt 18540  T
Q  183 tggagtgctaacgtgcctgcagacacctttcgttccaccgcgaagactcatc 234  Q
    ||||||||||| ||| ||||||  || ||||||| ||||| |||||||||||    
T  18541 tggagtgctaaagtgtctgcaggaacatttcgtttcaccgtgaagactcatc 18592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 9010 - 8954
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 220  Q
    ||||||||  ||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  9010 tccattacatacttgagcgttggagtgctaacgtgtctgcaggcacc-ttcgttccac 8954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 6873 - 6982
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||  ||||||| | |||| |  | || |||||||||||||||  |||  ||||||||||| |   || ||||||||||||| ||    
T  6873 tcacttttcacaacacttcttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaacgtgcctaccagcatctttcgttccaccacg 6972  T
Q  225 aagactcatc 234  Q
    ||||||||||    
T  6973 aagactcatc 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 42289 - 42229
Alignment:
Q  163 tccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 223  Q
    ||||||| |||||||| ||| | |||||||| |||||||||| ||||||||||| ||||||    
T  42289 tccattattgacttgatcgtcgaagtgctaatgtgcctgcagccacctttcgtttcaccgc 42229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 11591 - 11488
Alignment:
Q  125 tcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgcg 224  Q
    ||||||||||||||||||   | |||| |||||| |  ||||||| |||  ||||||||||||||||||| ||  || || |||| |||||||||||  |    
T  11591 tcacttttcacaacactt---atacactctttctcagttccattaatgaggtgagcgttggagtgctaacatggttgtaggcaccattcgttccaccttg 11495  T
Q  225 aagactc 231  Q
    |||||||    
T  11494 aagactc 11488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 31830 - 31933
Alignment:
Q  117 tgtatgattcacttttcacaacactttctacacacactttcttaactccattactgacttgagcgttggagtgctaacgtgcctgcagacacctttcgtt 216  Q
    |||| ||||||| || ||||||||||||||||||  |||||| || |   |||||||||| ||| | |||  ||||||| ||||||| ||| |||| |||    
T  31830 tgtacgattcacattacacaacactttctacacaatctttctcaatt---ttactgacttaagcatcggatagctaacgcgcctgcaaacatcttttgtt 31926  T
Q  217 ccaccgc 223  Q
    |||||||    
T  31927 ccaccgc 31933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University