View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704R-Insertion-7 (Length: 552)
Name: NF3704R-Insertion-7
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704R-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 36291845 - 36292387
Alignment:
| Q |
8 |
atatatgatgtgatttattgatccaacagtgaaaagacacatatgcatgatacaagactattttacttatgtaagttagacaaagtttaattttcttcac |
107 |
Q |
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| T |
36291845 |
atatatgatgtgatttattgatccaacagtgaaaagacatatgtgcatgatacaagactactttacttgtgtaagttagacaaagtctaattttcttcac |
36291944 |
T |
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| Q |
108 |
atataagttcatctgcaattacaataacttgaagtagcctaaatttggcagcatatgtttgagaataagtttgtttcggattgggccaaaactcatttcc |
207 |
Q |
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| T |
36291945 |
atataagttcatatgcaattacaataacttgaagtagcctaaatttggcagcatatgtttgagaataagtttgtttcggattgggccaaaactcatttcc |
36292044 |
T |
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| Q |
208 |
tttacggactgagtccctttgagtcactagctaacatacaaactatcacataaactcgtcctagaaagaccgaatatgctcttctaagaggaatttggac |
307 |
Q |
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| T |
36292045 |
tttacggactgagtccctttgagtcactagctcacatacgaactatcacataaactcgtcctagaaagatcgaatatgctcttctaagaggaatttggac |
36292144 |
T |
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| Q |
308 |
tgtccatttcggatacaagagcaacttgatctaaccagttcgtacgtgtcccttgagacagctgtctagactagggtttggacagggtcggtccaaaggt |
407 |
Q |
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| T |
36292145 |
tgtccatcttggatacaagagcaacttgatctaacctgttcgtacgtgtcccttgagacagctgtctagactagggtttgggcagggtcggtccaaaggt |
36292244 |
T |
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| Q |
408 |
caactagcccaaacaagggctttagtcc----aaaataagctcaatatataagcaataagctcaatagtccaaaatctcatgnnnnnnnnntttacagtg |
503 |
Q |
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| T |
36292245 |
caactagcccaaacaagggctttagacctaaaaaaaaaaatacctcatataagcaataagctcaatagtccaaaatctcatgcaaaaaaaatttacagtt |
36292344 |
T |
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| Q |
504 |
agaaaagaaa-gctcccatcatgagtcaaccatagaagacttc |
545 |
Q |
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| T |
36292345 |
agaaaagaaaggctcccatcatgagtcaaccatggaaggcttc |
36292387 |
T |
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