View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704R-Insertion-8 (Length: 520)

Name: NF3704R-Insertion-8
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704R-Insertion-8
NF3704R-Insertion-8
[»] chr4 (1 HSPs)
chr4 (9-520)||(53345704-53346209)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 53346209 - 53345704
Alignment:
Q  9 attttgtggaaattatagcctataatgtaaataattgtatttgctattatgtaactgtaaagttgctggttatcacgagacacgaaagtatatacagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53346209 attttgtggaaattatagcctataatgtaaataattgtatgtgctattatgtaactgtaaagttgctggttatcacgagacacgaaagtatatacagaaa 53346110  T
Q  109 gaacnnnnnnncttcaatctattaccagttggtcttgaaatagactagtaatgaagtatgaaaattcttgtctctaacaatta----taaaggttttagc 204  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  53346109 gaacaaaaaaacttcaatctattaccagttggtcttgaaatagactagtaatgaagtatgaaaattcttgtctctaacaattaattataaaggttttagc 53346010  T
Q  205 actgtaaggactacacgtgatgtttaatctgaaagtaaaattaaattcattatcatgcattagctatattttcttgtgttttgctaccgatggatcaacc 304  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53346009 actgtaaggactacacgtgatgtttaatctgaaa----------attcattatcatgcattagctatattttcttgtgttttgctaccgatggatcaacc 53345920  T
Q  305 cgtggccgggtggggtaggatgaaaatttcaacctatatttgtaattcaacccactccatgtctccatcccattttagacatccggtaatcatattgttt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53345919 cgtggccgggtggggtaggatgaaaatttcaacctatatttgtaattcaacccactccatgtctccatcccattttagacatccggtaatcatactgttt 53345820  T
Q  405 gctatgtttgcgtctataactctaaaaaattattgttgtctccataataattattctacgttgctggagtaagggggaagagaggcagatataatcactt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||    
T  53345819 gctatgtttgcgtctataactctaaaaaattattgttgtctccataataattaatcttcgttgctggagtaagggggaagagagacagatataatcactt 53345720  T
Q  505 ttaattgatatactct 520  Q
    ||||||||||||||||    
T  53345719 ttaattgatatactct 53345704  T

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