View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704R-Insertion-9 (Length: 516)
Name: NF3704R-Insertion-9
Description: NF3704R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704R-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 512
Target Start/End: Complemental strand, 44924150 - 44923676
Alignment:
| Q |
9 |
ttattgttttcgtttcatcctcctgataaaaacaactgtttgtgtattgtttattctagtatcctgggactgttggtagaaactcaaatccggctcaagt |
108 |
Q |
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| T |
44924150 |
ttattgttttcttttcatcctcctgataaaaacaactgtttgtgtgttgtttattctagtatcctgggactgttggtagaaactcaaatccggcacaagt |
44924051 |
T |
|
| Q |
109 |
tccttccttaatataaaaatattagttcaatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccat |
208 |
Q |
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| T |
44924050 |
tccttccttaatataaaaatattagttcaatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccat |
44923951 |
T |
|
| Q |
209 |
ctgtttgtttaccacaactccctaaggtgtctgttagaaaggacataagtttcattttcttgctggtagttgcaacatagaaaatcacatcttttaatcc |
308 |
Q |
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| T |
44923950 |
ctgtttgtttaccacaactccctcaggtgtctgttaga--------------gattttcttgctggtagttgcaacatagaaaat--------------c |
44923879 |
T |
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| Q |
309 |
accttctttgttcaaagaaagggaatatccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaa |
408 |
Q |
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| T |
44923878 |
accttctttgttcaaagaaagggaattaccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaa |
44923779 |
T |
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| Q |
409 |
actgatgaatgcgtccttgaaattgttgcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacacccataagtactg |
508 |
Q |
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| T |
44923778 |
actgatgaatgcgtccttgaaattgttgcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacaccc-taagtactg |
44923680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 29515086 - 29515124
Alignment:
| Q |
21 |
tttcatcctcctgataaaaacaactgtttgtgtattgtt |
59 |
Q |
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| T |
29515086 |
tttcatcctcctgataaaaacaactgtttgtgtgttgtt |
29515124 |
T |
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