View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704_1D_high_12 (Length: 213)

Name: NF3704_1D_high_12

Description: NF3704_1D

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3704_1D_high_12

[»] chr6 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 137; E-Value: 1e-71

Query Start/End: Original strand, 11 - 207

Target Start/End: Original strand, 16438208 - 16438403

Alignment:

Q	11	acatcaacacaaaaatggcagcgacagtggagattgatccaaatcgaaggtgacaaagagcagataaagaaagagaaacaaaacaaacccccaaaaatgg	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	16438208	acatcaacacaaaaatggcagcgactttggagatggatccaaatcgaaggtaacaaag-gtagacaaagaaagaaaaacaaaacaaaccctcaaaaatgg	16438306	T

Q	111	aatcaacccgcaaactcgtcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaacaccaa	207	Q
		\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16438307	aaccaacccacaaactcctcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaacttctaacccaacaacaccaa	16438403	T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 131 - 207

Target Start/End: Original strand, 39041731 - 39041807

Alignment:

Q	131	atcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaacaccaa	207	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|
T	39041731	atcatcaccacaaccaaaattcaccaccacacacaagatcacaattaacattccaactcccagtccaacatcaccaa	39041807	T

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