View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_high_2 (Length: 464)
Name: NF3704_1D_high_2
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_high_2 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 46239102 - 46238657
Alignment:
| Q |
19 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239102 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
46239003 |
T |
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| Q |
119 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239002 |
cagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
46238903 |
T |
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| Q |
219 |
accccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaaaatgcagttaaacttggtgttgtcctgcacacataaaattggac |
318 |
Q |
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| T |
46238902 |
accccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaaaatgcagttgaacttggtgttgtcctgcactcaaaaaattggac |
46238803 |
T |
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| Q |
319 |
caataacattaagacacgtgtcttaaacgaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaattaaaaacccta |
418 |
Q |
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| T |
46238802 |
caataacattaagacacgtgtctttaacgaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaattaaaaacccta |
46238703 |
T |
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| Q |
419 |
aaaaattcacaacttctttaacgttttcctccttttcctcgttaac |
464 |
Q |
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| T |
46238702 |
aaaaattcacaacatctttaacgttttcctccttttcctcgttaac |
46238657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 283
Target Start/End: Complemental strand, 23540366 - 23540223
Alignment:
| Q |
140 |
ataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttgaaccccacctctgtagaatatg |
239 |
Q |
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| T |
23540366 |
ataaccccagctcctaacaagttccttgataactgctactttccaagcatcagggtctatatcagacacaattgtttccacaccacctctatagaaaatg |
23540267 |
T |
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| Q |
240 |
gtttcttccctgacaaactctcccccatggtgaaaaatgcagtt |
283 |
Q |
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| T |
23540266 |
gttttatgcctaaaaaactccccaccatggtgaaagatgcagtt |
23540223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 3455555 - 3456001
Alignment:
| Q |
19 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455555 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
3455654 |
T |
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| Q |
119 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3455655 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttta |
3455754 |
T |
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| Q |
219 |
acccc-acctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaaaatgcagttaaacttggtgttgtcctgcacacataaaattgga |
317 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
3455755 |
acccccacctctgtagaatacggtttcttccctgacaaactctcccccatggtgaaaaatgcagttgaacttggtgttgtcctgcacacaaaaaattgga |
3455854 |
T |
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| Q |
318 |
ccaataacattaagacacgtgtcttaaacgaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaattaaaaaccct |
417 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3455855 |
ccaataacattaagacacgtgtcttataagaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaatttaaaaccct |
3455954 |
T |
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| Q |
418 |
aaaaaattcacaacttctttaacgttttcctccttttcctcgttaac |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455955 |
aaaaaattcacaacttctttaacgttttcctccttttcctcgttaac |
3456001 |
T |
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