View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_high_3 (Length: 435)
Name: NF3704_1D_high_3
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 9772812 - 9773191
Alignment:
| Q |
20 |
ataagaataagggtagggaggtctaaaattcatttagcgtatgagaaagtttcaagactcaaagaacgtttaaagattacatattattagcgttatcgtt |
119 |
Q |
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| T |
9772812 |
ataagaataagtgtagggaggtctaaaattcatttagcgtatgagaaagcttcaagactcaaagaac-------------atattattagcgttatcgtt |
9772898 |
T |
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| Q |
120 |
attttttattttgctgctttagaaataaccttgatgtattcaccttcatctagggtttcttccacatcttcatgaacgttatgccatagctcagaaggaa |
219 |
Q |
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| T |
9772899 |
attttttattttgctgctttagaaataaccttgatgtattcaccttcatctagggtttcttccatattttcatgaacgttatgccatagctcagaaggaa |
9772998 |
T |
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| Q |
220 |
ttatttaatcattattcataaagatga--atactccaaaccctgaaaattatgggtttcatgattataaactagagaatcccgaagcaaaaattcttcgt |
317 |
Q |
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|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9772999 |
ttatttgatcattatgcataaagatgagaatactccaaaccctgaaaattatgggtttcatgattataaactagagaatcccgaagcaaaaattcttcgt |
9773098 |
T |
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| Q |
318 |
aaatagtattttcatcttccatatctttgttcaagtcattttgatgtttcggtttttcacctgtagatttagattttgtaacttccccttatt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9773099 |
aaatagtattttcatcttccatatctttgttcaagtcattttgatgtttcggtttttcacctgtagatttagattttgtaacttccccttatt |
9773191 |
T |
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