View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3704_1D_high_4 (Length: 352)
Name: NF3704_1D_high_4
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 185 - 336
Target Start/End: Complemental strand, 9772619 - 9772466
Alignment:
| Q |
185 |
aaatcaaaatcttcaaatccagagtatgatatagtctaaggatattaacaaaattttagattaaaaataatatatcagtaaacta--ttannnnnnnatt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
9772619 |
aaatcaaaatcttcaaatccagagtatgatatagtctaaggatattaacaaaattttagattaaaaataatatatcagtaaactatttttttattttatt |
9772520 |
T |
|
| Q |
283 |
ttagtaaacatgtagaatacttaaacaataaacaatcttggtacgacgtttgat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9772519 |
ttagtaaacatgtagaatacttaaacaataaacaatcttggtacgacgtttgat |
9772466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 9772799 - 9772665
Alignment:
| Q |
5 |
tgcaaaatcatgtctacaatgttttaagtttgaccaatttcttggacttacattatgtttgcattgtcgannnnnnnnnnnngcaacgtttgtttaaaag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
9772799 |
tgcaaaatcatgtctacaatgttttaagtttgaccaatttcttggatttacattatgtttgcattgtcaattttttttttttacaacgtttgtttaaaaa |
9772700 |
T |
|
| Q |
105 |
acacgtttgacattttaatatttagatacatagac |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9772699 |
acacgtttgacattttaatatttagatacatagac |
9772665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University