View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_12 (Length: 296)
Name: NF3704_1D_low_12
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 34184163 - 34184434
Alignment:
| Q |
1 |
gtaagacacactggcatgctacaagttcctccttatggaagcactttgcagtcgagcaacatgtcttacgctggaggatacgcatgcggctcagtagtag |
100 |
Q |
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| T |
34184163 |
gtaagacacactggcatgctacaagttcctccttatggatgcactttgcagtcgagcaacatgtcttacgctggaggatacgcatgcggctcagtagtag |
34184262 |
T |
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| Q |
101 |
gaatttcacttccagttcaggactattcgatggagcaaccatgaacatgttttccacctaaatctaatggtcctgcaacatatctgccacaacccgatgt |
200 |
Q |
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| T |
34184263 |
gaatttcacttccagttcaggactattcgatggagcaaccatgaacatgttttccacctaaatctaatggtcctgcaacatatctgccacaacccgatgt |
34184362 |
T |
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| Q |
201 |
gtctgtaccaaccatggtgggtttgatgaatccttagctagcaattatgttggtgaaaagccatgaatcatg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34184363 |
gtctgtaccaaccatggtgggtttgatgaatccttagctagcaattatgttggtgaaaagccatgaatcatg |
34184434 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 9430624 - 9430684
Alignment:
| Q |
22 |
caagttcctccttatggaagcactttgcagtcgagcaacatgtcttacgctggaggatacg |
82 |
Q |
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|||||||| ||||||||||| ||| |||| |||||||||||||||||||| || |||||| |
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| T |
9430624 |
caagttccaccttatggaagtactatgcaagcgagcaacatgtcttacgctcgaagatacg |
9430684 |
T |
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