View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_14 (Length: 285)
Name: NF3704_1D_low_14
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 5605651 - 5605874
Alignment:
| Q |
41 |
tggggagttgtacctaatgtgataacgtacaattcaatcattgatgctggggcgaaaggggaagtgagttttgatgtagtcgttaagttttacgatgaaa |
140 |
Q |
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| T |
5605651 |
tggggagttgtacctaatgtgataacgtacaattcaatcattgatgctggggcgaaaggggaagtgagttttgatgtagtcgttaagttttacgatgaaa |
5605750 |
T |
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| Q |
141 |
tgatagccaacggcttaatgccagatcgtcttacttacaactcactcctttctgtttgcgcatcgaagggcatgtgggaaatggctcaaaaattattgag |
240 |
Q |
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| T |
5605751 |
tgatagccaacggcttaatgccagatcggcttacttacaactcactcctttctgtttgcgcatcgaagggcatgtgggaaatggctcaaaaattattgag |
5605850 |
T |
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| Q |
241 |
tgaaatggaccacaggtgtattgt |
264 |
Q |
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| T |
5605851 |
tgaaatggaccacaggtgtattgt |
5605874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 5595222 - 5595053
Alignment:
| Q |
80 |
attgatgctggggcgaaaggggaagtgagttttgatgtagtcgttaagttttacgatgaaatgatagccaacggcttaatgccagatcgtcttacttaca |
179 |
Q |
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| T |
5595222 |
attgatgcgggggctaaaggggaggtggattttgatgtagttgttaagttttttgatgaaatgctagctgaaggcattgtgccagataggcttacttaca |
5595123 |
T |
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| Q |
180 |
actcactcctttctgtttgcgcatcgaagggcatgtgggaaatggctcaaaaattattgagtgaaatgga |
249 |
Q |
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| T |
5595122 |
attcactgctttctgtctgcgcctcgaagggcatgtgggaaacggctcagaagttattgagtgaaatgga |
5595053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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