View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_15 (Length: 273)
Name: NF3704_1D_low_15
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 35072096 - 35071842
Alignment:
| Q |
19 |
aggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttga |
118 |
Q |
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| T |
35072096 |
aggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttga |
35071997 |
T |
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| Q |
119 |
gcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttact |
218 |
Q |
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| T |
35071996 |
gcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttact |
35071897 |
T |
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| Q |
219 |
gtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagt |
273 |
Q |
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| T |
35071896 |
gtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagt |
35071842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 35072936 - 35072805
Alignment:
| Q |
19 |
aggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttga |
118 |
Q |
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| T |
35072936 |
aggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtgga |
35072837 |
T |
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| Q |
119 |
gcgtagtagtggtaaattcatgaggagtttta |
150 |
Q |
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| T |
35072836 |
gcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
167 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
232 |
Q |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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