View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704_1D_low_18 (Length: 256)

Name: NF3704_1D_low_18
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704_1D_low_18
NF3704_1D_low_18
[»] chr4 (14 HSPs)
chr4 (95-256)||(38011611-38011772)
chr4 (85-216)||(2815079-2815210)
chr4 (114-234)||(20649952-20650070)
chr4 (145-205)||(1745423-1745483)
chr4 (77-230)||(35260214-35260367)
chr4 (120-203)||(18402887-18402969)
chr4 (146-205)||(44136799-44136858)
chr4 (153-202)||(41839745-41839794)
chr4 (144-205)||(44311843-44311904)
chr4 (145-205)||(25100368-25100428)
chr4 (161-205)||(30257435-30257479)
chr4 (169-205)||(44207001-44207037)
chr4 (153-207)||(21081557-21081611)
chr4 (160-233)||(21481129-21481202)
[»] chr1 (17 HSPs)
chr1 (34-255)||(48563132-48563352)
chr1 (120-204)||(16256436-16256520)
chr1 (76-256)||(52148735-52148920)
chr1 (153-205)||(50959525-50959577)
chr1 (146-204)||(15394629-15394687)
chr1 (160-233)||(2688419-2688492)
chr1 (106-207)||(18650443-18650544)
chr1 (153-205)||(18628969-18629021)
chr1 (120-204)||(27901223-27901307)
chr1 (147-205)||(33323885-33323943)
chr1 (160-205)||(26925120-26925165)
chr1 (145-205)||(8327000-8327060)
chr1 (160-203)||(26759373-26759416)
chr1 (121-205)||(26762228-26762310)
chr1 (145-197)||(19757744-19757796)
chr1 (171-205)||(23777054-23777088)
chr1 (174-242)||(14167939-14168007)
[»] chr8 (7 HSPs)
chr8 (36-216)||(41566061-41566240)
chr8 (34-231)||(1029712-1029907)
chr8 (58-235)||(11954568-11954743)
chr8 (158-205)||(10659197-10659244)
chr8 (158-205)||(14442611-14442658)
chr8 (158-205)||(14575372-14575419)
chr8 (169-205)||(41940098-41940134)
[»] chr2 (16 HSPs)
chr2 (129-233)||(39228870-39228974)
chr2 (160-233)||(12419511-12419584)
chr2 (160-233)||(12431571-12431644)
chr2 (129-203)||(36254555-36254629)
chr2 (158-205)||(9848110-9848157)
chr2 (163-204)||(38002026-38002067)
chr2 (145-205)||(5136175-5136235)
chr2 (129-239)||(14695075-14695185)
chr2 (160-205)||(4730702-4730747)
chr2 (160-205)||(18482111-18482156)
chr2 (107-205)||(20105294-20105398)
chr2 (160-233)||(39711674-39711747)
chr2 (162-204)||(4724348-4724390)
chr2 (129-198)||(463780-463849)
chr2 (174-211)||(27185801-27185838)
chr2 (174-211)||(27835343-27835380)
[»] chr7 (11 HSPs)
chr7 (58-239)||(16994380-16994560)
chr7 (105-256)||(27900288-27900441)
chr7 (90-256)||(28002574-28002741)
chr7 (160-216)||(10623353-10623409)
chr7 (160-207)||(28302153-28302200)
chr7 (160-205)||(10019751-10019796)
chr7 (169-205)||(46611518-46611554)
chr7 (160-204)||(20118263-20118307)
chr7 (163-202)||(5907018-5907057)
chr7 (155-206)||(11203311-11203362)
chr7 (153-205)||(2620577-2620629)
[»] chr3 (8 HSPs)
chr3 (78-216)||(7903391-7903530)
chr3 (34-241)||(35740149-35740355)
chr3 (153-205)||(47005841-47005893)
chr3 (145-205)||(24405027-24405087)
chr3 (169-205)||(28421122-28421158)
chr3 (160-199)||(28180527-28180566)
chr3 (160-198)||(45850678-45850716)
chr3 (160-196)||(28159077-28159113)
[»] chr6 (7 HSPs)
chr6 (129-205)||(8209982-8210058)
chr6 (145-252)||(3008802-3008903)
chr6 (158-203)||(29032699-29032744)
chr6 (165-233)||(6257236-6257303)
chr6 (145-203)||(31304017-31304075)
chr6 (159-231)||(6189653-6189725)
chr6 (164-205)||(3709552-3709593)
[»] scaffold0003 (1 HSPs)
scaffold0003 (129-205)||(353238-353314)
[»] chr5 (4 HSPs)
chr5 (153-225)||(18274022-18274094)
chr5 (160-205)||(24099433-24099478)
chr5 (159-205)||(12566912-12566958)
chr5 (158-204)||(43168753-43168799)
[»] scaffold0174 (1 HSPs)
scaffold0174 (160-205)||(30582-30627)
[»] scaffold0914 (1 HSPs)
scaffold0914 (172-203)||(809-840)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 38011772 - 38011611
Alignment:
Q  95 cctttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38011772 cctttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaagggtctggttactaacgtattggactcatccctcgatctg 38011673  T
Q  195 agttcttacgcatatgtttgaagctggttgtgtttggtgacctgattacttagactctctga 256  Q
    | ||||||||  || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38011672 aattcttacgtgtaggtttgaagctggttgtgtttggtgacctgattgcttagactctctga 38011611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 2815210 - 2815079
Alignment:
Q  85 agacttttggcctttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatc 184  Q
    ||||||||||||| | |||||||||||||||||   |||| ||  ||||||||||| || |||| || |||| |||||||||||| ||||||||||||||    
T  2815210 agacttttggcctattttgatgtggtttggttttataaacccgagagggtatggttatgttaactcggaagggtctggttactaatgtattggactcatc 2815111  T
Q  185 cctcgatctgagttcttacgcatatgtttgaa 216  Q
    |  |||| ||||||||||||| ||||||||||    
T  2815110 ctacgatatgagttcttacgcgtatgtttgaa 2815079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 20649952 - 20650070
Alignment:
Q  114 gtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgttt 213  Q
    ||||| ||||| || ||||||||||||   |||||| | |||| | |||||| |||||||||| ||||||||||| |||||||||||||||||| |||||    
T  20649952 gtttcaaaaacccgaaagggtatggtta--ataacctgaaagggtttggttattaacgtattgaactcatccctcaatctgagttcttacgcatctgttt 20650049  T
Q  214 gaagctggttgtgtttggtga 234  Q
    ||| || || |||||||||||    
T  20650050 gaaacttgtggtgtttggtga 20650070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 1745423 - 1745483
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1745423 taacccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgc 1745483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 35260367 - 35260214
Alignment:
Q  77 gtggttgtagacttttggcctt-tcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtatt 175  Q
    ||||||| ||| |||||||||  | |||||||||||||||||||||| || | | ||||||||||||| ||||| | |||| | ||  ||||||| ||||    
T  35260367 gtggttgaagaattttggcctcgttttgatgtggtttggtttctaaacct-gaaggggtatggttctgttaacctgaaagggtttgaatactaacatatt 35260269  T
Q  176 ggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttg 230  Q
    ||| |||||| ||||| |||||||||| || |||||||||| |  ||||||||||    
T  35260268 ggattcatccatcgatttgagttcttatgcgtatgtttgaatcatgttgtgtttg 35260214  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 18402969 - 18402887
Alignment:
Q  120 aaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttac 203  Q
    ||||| || |||||| ||||||| | |||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  18402969 aaaacccgaaagggtctggttct-acaacccgaaagggtctggttactaacgtattgaactcatccatcgatctgagttcttac 18402887  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 44136799 - 44136858
Alignment:
Q  146 aacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  44136799 aacccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacgc 44136858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 41839794 - 41839745
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttctta 202  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||||    
T  41839794 aagggtcttgttactgacgtattggactcatccctcgatctgagttctta 41839745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 44311904 - 44311843
Alignment:
Q  144 ataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||| || |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||    
T  44311904 ataactcgaaaggttatggttactaatgtattagactcatcactcgatctgagttcttacgc 44311843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 25100368 - 25100428
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| |||| ||||||| || |||||||| ||||||||||||||||||||| ||||||    
T  25100368 taacccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacgc 25100428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 30257435 - 30257479
Alignment:
Q  161 ggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||    
T  30257435 ggttattaacgtattgaactcatccctcgatctgagtttttacgc 30257479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 44207037 - 44207001
Alignment:
Q  169 acgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||||||||||| |||||||||||||||||||    
T  44207037 acgtattggactcatccatcgatctgagttcttacgc 44207001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 21081557 - 21081611
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcat 207  Q
    |||| ||| |||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  21081557 aagggtctagttactgacgtattggtctcatcccttgatatgagttcttacgcat 21081611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 21481202 - 21481129
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    |||||||| ||| |||||||||||||||||| ||| ||||||| || |||| ||||| |  |||||| ||||||    
T  21481202 tggttactcacgaattggactcatccctcgacctgggttcttatgcgtatgattgaaacatgttgtggttggtg 21481129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 255
Target Start/End: Original strand, 48563132 - 48563352
Alignment:
Q  34 tgtttttcgtttttgttcgggctattcgagatcagagactggggtggttgtagacttttggcctttcttgatgtggtttggtttctaaaactcgtaaggg 133  Q
    |||||||| |||||||||| | | || | |||||||||||||| |||| | |||||||||||||   |||||||||||||||||   ||||  | |||||    
T  48563132 tgtttttcctttttgttcgtgttgtttgtgatcagagactggg-tggtcgaagacttttggcctagtttgatgtggtttggttttataaacctgaaaggg 48563230  T
Q  134 tatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    |||||||||  ||||| | |||| ||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||| || ||||||||||||     
T  48563231 tatggttctattaacctgaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgtttggtt 48563330  T
Q  234 acctgattacttagactctctg 255  Q
     | ||| ||||| |||||||||    
T  48563331 gcttgactactttgactctctg 48563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 16256436 - 16256520
Alignment:
Q  120 aaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    ||||| ||||||||| |||||||  ||||||| |||| |||| || || ||||||||||||||||||||||||||||||||||||    
T  16256436 aaaacccgtaagggtctggttcttttaacccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacg 16256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 256
Target Start/End: Original strand, 52148735 - 52148920
Alignment:
Q  76 ggtggttgtagacttttggcct-ttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggtt----ctggttactaac 170  Q
    |||||||| ||||||||||||| || ||||||||||||| |||| |||||    |||||||||||| || ||||||| |||| |    ||  ||| ||||    
T  52148735 ggtggttgaagacttttggcctctttttgatgtggtttgatttcaaaaacctaaaagggtatggttatgttaacccgaaagggttgcgctaattaataac 52148834  T
Q  171 gtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtgacctgattacttagactctctga 256  Q
    |||||||| || |||||||||||||||||||| || ||||||||||  |  |||||||||||| ||||| | ||| | ||||||||    
T  52148835 gtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacgtcattgtgtttggtggcctgactgcttcgcctctctga 52148920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 50959577 - 50959525
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  50959577 aagggtctggttactgacgtattggactcatccctcgatctgagttcttacgc 50959525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 15394629 - 15394687
Alignment:
Q  146 aacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    |||||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15394629 aacccgaaaggatctggttactaatgtattggacgcatccctcgatctgagttcttacg 15394687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 2688492 - 2688419
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||  | ||| | || |||||||||||||    
T  2688492 tggttactaacgtattggactcatcccacgatctgagttctaacgcatcagattgtaacttgttgtgtttggtg 2688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 18650544 - 18650443
Alignment:
Q  106 gtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| |||| | ||||| || |||||| ||||||   ||||||| |||| | |||||||| ||||||||||||||||||| ||||| |||||||||||    
T  18650544 gtggttcggttacaaaaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagttcttacgc 18650445  T
Q  206 at 207  Q
    ||    
T  18650444 at 18650443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 18629021 - 18628969
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  18629021 aagggtctggttactgacgtattggactcatccctcaatctgagttcttacgc 18628969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 27901307 - 27901223
Alignment:
Q  120 aaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    |||| |||||||||| |||||||  ||||||| |||| |||| || ||||  ||||||||||||||||||||| |||||||||||    
T  27901307 aaaattcgtaagggtctggttcttttaacccgaaagggtctgtttgctaatatattggactcatccctcgatcagagttcttacg 27901223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 33323885 - 33323943
Alignment:
Q  147 acccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||| |||| | |||||| | |||||||||||||||||||||||||||||||||||||    
T  33323885 acccgaaagggtatggttaatgacgtattggactcatccctcgatctgagttcttacgc 33323943  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 26925165 - 26925120
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||||| | |||||||||||||||||||||||||||||||||||    
T  26925165 tggttactgatgtattggactcatccctcgatctgagttcttacgc 26925120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 8327060 - 8327000
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| |||| ||||||| || |||||||| ||||||||||||||||||||| ||||||    
T  8327060 taacccgaaagggtctggtttctgacgtattgaactcatccctcgatctgagtttttacgc 8327000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 26759373 - 26759416
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttac 203  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  26759373 tggttactgacgtattggactcatccctcgatctaagttcttac 26759416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 26762228 - 26762310
Alignment:
Q  121 aaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||| ||||||||| ||||||   ||||||| |||| ||||||||||||||||||| ||||  |||||||||||| || ||||||    
T  26762228 aaacccgtaagggtctggttcgtttaacccgaaagggtctggttactaacgtattgaactc--ccctcgatctgactttttacgc 26762310  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 19757744 - 19757796
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagt 197  Q
    ||||||| |||| ||| ||| ||||||||||||||||||||| ||||||||||    
T  19757744 taacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 23777054 - 23777088
Alignment:
Q  171 gtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||||||||||||||||||||||| |||||    
T  23777054 gtattggactcatccctcgatctgagttcctacgc 23777088  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 14168007 - 14167939
Alignment:
Q  174 ttggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtgacctgatta 242  Q
    ||||||||||||||||||||| || ||||||| | | |||||| |  ||||||||||||| | ||||||    
T  14168007 ttggactcatccctcgatctgggtccttacgcgtgtatttgaaacctgttgtgtttggtggcttgatta 14167939  T

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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 41566061 - 41566240
Alignment:
Q  36 tttttcgtttttgttcgggctattcgagatcagagactggggtggttgtagacttttggcctttcttgatgtggtttggtttctaaaactcgtaagggta 135  Q
    |||||| |||||||||| | | |||  ||||| ||| ||||||||| | ||||||||||||| | ||||||||||||| |||   |||| || |||||||    
T  41566061 tttttcctttttgttcgtgatgttcatgatcaaaga-tggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccgaaagggta 41566159  T
Q  136 tggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaa 216  Q
    |||||||| ||||||  |||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||    
T  41566160 tggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaa 41566240  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 1029907 - 1029712
Alignment:
Q  34 tgtttttcgtttttgttcgggctattcgagatcagagactggggtggttgtagacttttggcctttcttgatgtggtttggtttcta-aaactcgtaagg 132  Q
    |||||||| |||||| | | ||| || | ||||| |||||||| |||||| |||||||| |||| | |||| ||||||| ||| ||| |||| || ||||    
T  1029907 tgtttttcctttttgcttgtgctgtttgtgatcatagactggg-tggttgaagacttttagcctattttgaagtggttttgtt-ctataaacccggaagg 1029810  T
Q  133 gtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttgg 231  Q
    || |||||||  ||||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| |  |||||||||||    
T  1029809 gtctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgtttgg 1029712  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 235
Target Start/End: Complemental strand, 11954743 - 11954568
Alignment:
Q  58 ttcgagatcagagactggggtggttgtagacttttggcctttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggt 157  Q
    |||| |||||||||||||| |||||| ||||||| | ||| | |||||||| ||||| ||| ||||  |  |||||| || ||| | ||||||| ||||     
T  11954743 ttcgtgatcagagactggg-tggttgaagacttt-gacctcttttgatgtgatttggcttcaaaaatcccaaagggtgtgattccgttaacccgaaaggg 11954646  T
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtgac 235  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||    |||||||||||||||    
T  11954645 tctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaattccgttgtgtttggtgac 11954568  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 10659244 - 10659197
Alignment:
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  10659244 tctggttgctgacgtattggactcatccctcgatctgagttcttacgc 10659197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 14442658 - 14442611
Alignment:
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  14442658 tctggtttctatcgtattagactcatccctcgatctgagttcttacgc 14442611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 14575419 - 14575372
Alignment:
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||    
T  14575419 tctggttactgacgtattagactcatccctcgatctgattttttacgc 14575372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 41940134 - 41940098
Alignment:
Q  169 acgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  41940134 acgtattgaactcatccctcgatctgagtttttacgc 41940098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 39228870 - 39228974
Alignment:
Q  129 aagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtt 228  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| ||| |||||||    
T  39228870 aaggctatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaaactgcttgtgtt 39228969  T
Q  229 tggtg 233  Q
    |||||    
T  39228970 tggtg 39228974  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 12419584 - 12419511
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |   ||||||||||||    
T  12419584 tggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtg 12419511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 12431644 - 12431571
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |   ||||||||||||    
T  12431644 tggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtg 12431571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 36254555 - 36254629
Alignment:
Q  129 aagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttac 203  Q
    |||||| |||||||   |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  36254555 aagggtctggttctataaacccgaaaggttctggtttctatcgtattggactcatccctcgatctgagttcttac 36254629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 9848110 - 9848157
Alignment:
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  9848110 tctggttactgacgtattggactcatccctcgatctgagttcttacgc 9848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 38002026 - 38002067
Alignment:
Q  163 ttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38002026 ttactaacgtattggactcatccctcgatctgagttcttacg 38002067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 5136175 - 5136235
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| |||| | ||| || |||||||||||||||||||||||||||||||||||||||    
T  5136175 taacccgaaagggtttggctattaacgtattggactcatccctcgatctgagttcttacgc 5136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 14695185 - 14695075
Alignment:
Q  129 aagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtt 228  Q
    |||||| | |||||| |||| || |||| ||| ||||||||||||||||||| ||| |||||||| ||||||||||  ||||| |||| |  ||| ||||    
T  14695185 aagggtctcgttctgttaactcgaaagggtctagttactaacgtattggacttatcactcgatctaagttcttacgagtatgtatgaaacatgttctgtt 14695086  T
Q  229 tggtgacctga 239  Q
    ||||| |||||    
T  14695085 tggtggcctga 14695075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 4730702 - 4730747
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  4730702 tggttactaacgtattggactcatcccacgatctgagttctaacgc 4730747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 18482156 - 18482111
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  18482156 tggttattaacatattggactcatccctcgatctgagttcttacgc 18482111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 20105294 - 20105398
Alignment:
Q  107 tggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctg----gttact--aacgtattggactcatccctcgatctgagttct 200  Q
    ||||| |||||| ||||| || |||||| | |||||| ||||||| |||| ||||    ||||||  ||||||||||||||||| |||||||||||||||    
T  20105294 tggttcggtttcaaaaacccgaaagggtctagttctgttaacccgaaagggtctgattggttactttaacgtattggactcatcactcgatctgagttct 20105393  T
Q  201 tacgc 205  Q
    |||||    
T  20105394 tacgc 20105398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 39711747 - 39711674
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    ||||||||||||||||| ||||||  ||  || |||||| |||||||| || ||||| ||||||||||||||||    
T  39711747 tggttactaacgtattgaactcattactaaatttgagtttttacgcatctgattgaaactggttgtgtttggtg 39711674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 4724348 - 4724390
Alignment:
Q  162 gttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    ||||||||||||||||| |||||||| |||||| |||||||||    
T  4724348 gttactaacgtattggaatcatcccttgatctgggttcttacg 4724390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 463780 - 463849
Alignment:
Q  129 aagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagtt 198  Q
    |||||| ||||||  |||||||| |||| |||| || || |||||||| ||||||||| |||||||||||    
T  463780 aagggtctggttcgtataacccgaaaggatctgatttctgacgtattgaactcatcccccgatctgagtt 463849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 27185801 - 27185838
Alignment:
Q  174 ttggactcatccctcgatctgagttcttacgcatatgt 211  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27185801 ttggactcatccctcgatctgagttcatacgcgtatgt 27185838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 27835343 - 27835380
Alignment:
Q  174 ttggactcatccctcgatctgagttcttacgcatatgt 211  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27835343 ttggactcatccctcgatctgagttcatacgcgtatgt 27835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 16994380 - 16994560
Alignment:
Q  58 ttcgagatcagagactggggtggttgtagacttttggcct-ttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaagg 156  Q
    |||| ||||||||| |||| |||||| ||||||||||||| || ||||||||||  ||||||||||||| | ||||||||| || || ||||||| ||||    
T  16994380 ttcgtgatcagagattggg-tggttgaagacttttggcctctttttgatgtggta-ggtttctaaaacttgaaagggtatgattttgttaacccgaaagg 16994477  T
Q  157 ttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtgacctga 239  Q
     |||| ||||||   |||||||||| ||||| ||||||||||||||||  |||||||||| || ||||||||||||| |||||    
T  16994478 gtctgattactagtttattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtggcctga 16994560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 27900441 - 27900288
Alignment:
Q  105 tgtggtttggtttctaaaactcgtaagggtatggttctgataa--cccgcaaggttctggttactaacgtattggactcatccctcgatctgagttctta 202  Q
    ||||||| |||||| ||||| || ||||||||| || || |||  |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  27900441 tgtggttcggtttcaaaaacccgaaagggtatgtttatgttaaaacccgaaagggtctggttactaacatattggactcatccctcgatctgagttctta 27900342  T
Q  203 cgcatatgtttgaagctggttgtgtttggtgacctgattacttagactctctga 256  Q
    | | |||||||||| |  | ||||||||||| ||||| ||||| ||||||||||    
T  27900341 cacgtatgtttgaaacctgctgtgtttggtggcctgactacttcgactctctga 27900288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 28002574 - 28002741
Alignment:
Q  90 tttggcctttcttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcg 189  Q
    |||||||| | ||||||||| |||||||| |||||  | |||||||||  |||| ||| | | |||| |||||||| |||||||||| ||||||||||||    
T  28002574 tttggcctcttttgatgtggattggtttcaaaaacctgaaagggtatgactctgctaatctgaaagggtctggttattaacgtattgaactcatccctcg 28002673  T
Q  190 atctgagttcttacg-catatgtttgaagctggttgtgtttggtgacctgattacttagactctctga 256  Q
    |||||||||||||||   | |||||||| || ||||||||||||| ||||| ||||| ||||||||||    
T  28002674 atctgagttcttacgatgtctgtttgaatctcgttgtgtttggtggcctgactacttcgactctctga 28002741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 10623353 - 10623409
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  10623353 tggttactaacgtattggactcatccctcgatctgagttctaacgcatttgtttgaa 10623409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 28302200 - 28302153
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgcat 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28302200 tggttactaacgtattggactcatccctcgatctgtgttcttacgcat 28302153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 10019796 - 10019751
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  10019796 tggttactaacgtattggactcatccctcgatttgagttcttacgc 10019751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 46611554 - 46611518
Alignment:
Q  169 acgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||||||||||||||||||||||||||||||||||    
T  46611554 acgtattggactcatccctcgatctgagttcttacgc 46611518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 20118307 - 20118263
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||    
T  20118307 tggttgctgacgtattggactcatccctcgatatgagttcttacg 20118263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 5907018 - 5907057
Alignment:
Q  163 ttactaacgtattggactcatccctcgatctgagttctta 202  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  5907018 ttactaacgtattggactcatccctcgatatgagatctta 5907057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 11203362 - 11203311
Alignment:
Q  155 ggttctggttactaacgtattggactcatccctcgatctgagttcttacgca 206  Q
    |||||||||| || |||||||| ||||||| ||||||||||||||| |||||    
T  11203362 ggttctggttgctgacgtattgaactcatcactcgatctgagttctaacgca 11203311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 2620577 - 2620629
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||| || || ||||||| || ||||| ||||||||||||||||||||    
T  2620577 aaggttctgattgctgacgtatttgattcatctctcgatctgagttcttacgc 2620629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 7903391 - 7903530
Alignment:
Q  78 tggttgtagacttttggcctttct-tgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaaggttctggttactaacgtattg 176  Q
    |||||| ||||||||||||| | | ||||||||||||||||| |||||| | || | |||||||||| ||||||| |||| | || ||||||||||||||    
T  7903391 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaagatatggttctgttaacccgaaagggtttgattactaacgtattg 7903490  T
Q  177 gactcatccctcgatctgagttcttacgcatatgtttgaa 216  Q
    |  |||| ||||||| ||||||||||||||||||||||||    
T  7903491 gggtcattcctcgatttgagttcttacgcatatgtttgaa 7903530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 241
Target Start/End: Complemental strand, 35740355 - 35740149
Alignment:
Q  34 tgtttttcgtttttgttcgggctattcgagatcagagactggggtggttgtagacttttggcctt-tcttgatgtggtttggtttctaaaactcgtaagg 132  Q
    |||||||| ||||||||||   | |||| ||||| |||||||| |||||| ||||||| |||||| | |||||||| ||||||||| ||||| || ||||    
T  35740355 tgtttttcatttttgttcgttttgttcgtgatcaaagactggg-tggttgaagacttt-ggccttgttttgatgtgatttggtttcaaaaacccgaaagg 35740258  T
Q  133 gtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggt 232  Q
    | ||||||||| || |||| |||| ||| | || ||||||||||||||| |||||||||||||||||||| |||| |||| | |    ||||||||||||    
T  35740257 gaatggttctgttagcccgaaagggtctagctattaacgtattggactcgtccctcgatctgagttcttatgcatctgttcgcattccgttgtgtttggt 35740158  T
Q  233 gacctgatt 241  Q
    | |||||||    
T  35740157 ggcctgatt 35740149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 47005893 - 47005841
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  47005893 aagggtctggttactgacgtattggactcatccctcgatcttagttcttacgc 47005841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 24405027 - 24405087
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||| |||| | |||||| |||||||||||||||||| |||||||  |||||||||||    
T  24405027 taacccgaaagggtttggttattaacgtattggactcatctctcgatcatagttcttacgc 24405087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 28421122 - 28421158
Alignment:
Q  169 acgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28421122 acgtattggactcatccctcgatttgagttcttacgc 28421158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 28180566 - 28180527
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttc 199  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  28180566 tggttactaacgtattgaactcatccctcaatctgagttc 28180527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 45850678 - 45850716
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagtt 198  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  45850678 tggttaccaacgtattggactcatccatcgatctgagtt 45850716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 28159113 - 28159077
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgag 196  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  28159113 tggttactaacatattgaactcatccctcgatctgag 28159077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 8209982 - 8210058
Alignment:
Q  129 aagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| |||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8209982 aagggtctggttcttctaacccggaaggttctggttactaacttattggactcatccctcgatctgagttcttacgc 8210058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 3008903 - 3008802
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtgacctgattact 244  Q
    ||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||      |||||||||||| ||||||| ||    
T  3008903 taacccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgtttga------ttgtgtttggtggcctgatttct 3008810  T
Q  245 tagactct 252  Q
    | ||||||    
T  3008809 tcgactct 3008802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 29032699 - 29032744
Alignment:
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29032699 tctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 6257236 - 6257303
Alignment:
Q  165 actaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttggtg 233  Q
    |||||| |||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||    
T  6257236 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaact-gttgtgtttggtg 6257303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 31304017 - 31304075
Alignment:
Q  145 taacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttac 203  Q
    ||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  31304017 taacccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 6189653 - 6189725
Alignment:
Q  159 ctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgtgtttgg 231  Q
    ||||||||||| ||||||||||||||||||||||| | |||||| |||| |||||||| ||  ||||||||||    
T  6189653 ctggttactaatgtattggactcatccctcgatctaaattcttaggcatctgtttgaaactttttgtgtttgg 6189725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 3709593 - 3709552
Alignment:
Q  164 tactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||||||||||||||||| | || |||||||||||||    
T  3709593 tactaacgtattggactcatcccacaatatgagttcttacgc 3709552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 353314 - 353238
Alignment:
Q  129 aagggtatggttctgataacccgcaaggttctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| |||| ||| |||| || |||| |||||||||| || ||||||||||||||||||||||||||||||||||    
T  353314 aagggtctggtcctgttaactcgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgc 353238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 18274022 - 18274094
Alignment:
Q  153 aaggttctggttactaacgtattggactcatccctcgatctgagttcttacgcatatgtttgaagctggttgt 225  Q
    |||| |||||||||||||  |||||||||||| ||||||| ||||| |||||| |||||||||| ||| ||||    
T  18274022 aagggtctggttactaacacattggactcatcactcgatcagagtttttacgcgtatgtttgaaactgattgt 18274094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 24099433 - 24099478
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||    
T  24099433 tggttattaacgtattgaactcatccctcgatctgagtttttacgc 24099478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 12566912 - 12566958
Alignment:
Q  159 ctggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    |||||| || |||||||| ||||||||||||||||||||| ||||||    
T  12566912 ctggtttctgacgtattgaactcatccctcgatctgagtttttacgc 12566958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 43168799 - 43168753
Alignment:
Q  158 tctggttactaacgtattggactcatccctcgatctgagttcttacg 204  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||||    
T  43168799 tctggttgctaacgtattagactcatccctcaatttgagttcttacg 43168753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 30582 - 30627
Alignment:
Q  160 tggttactaacgtattggactcatccctcgatctgagttcttacgc 205  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||    
T  30582 tggttactaacgtattggactcatcccacgatatgagttctaacgc 30627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0914 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 203
Target Start/End: Complemental strand, 840 - 809
Alignment:
Q  172 tattggactcatccctcgatctgagttcttac 203  Q
    ||||||||||||||||||||||||||||||||    
T  840 tattggactcatccctcgatctgagttcttac 809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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