View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_19 (Length: 253)
Name: NF3704_1D_low_19
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_19 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 40679 - 40930
Alignment:
| Q |
1 |
gtacctttcttcaattggttttaaccatttttccatcaataatattcagattattatcattttactatcatttcaatataacagtaccttttatcatatc |
100 |
Q |
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| T |
40679 |
gtacctttcttcaattggttttaaccatttttccatcaataatatttagattattatcattttactgtcatttcaatataacagtacctattatcatatc |
40778 |
T |
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| Q |
101 |
aaatcataacatttggtgctttcattgacctccccacatggctgacaacacacgcatgaaaacaatggaaaattccattactgagctcacaaaaaccttg |
200 |
Q |
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| T |
40779 |
aaatcataacatttggtgctttcattgacctccccacatggctgacaacacacgcatgaaaacaatggaaaatttcattactgagctcacaaaaaccttg |
40878 |
T |
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| Q |
201 |
caacaatatatggttgagtcagaccggcgccataacgaatactctcaacacc |
252 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
40879 |
caacaatatatggttgagttagacaggcgccataacgaatactctcaacacc |
40930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 45509 - 45619
Alignment:
| Q |
1 |
gtacctttcttcaattggttttaaccatttttccatcaataatattcagattattatcattttactatcatttcaatataacagtaccttttatcatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
45509 |
gtacctttcttcaattggttttaaccatttttccatcaataatatttagattattatcattttactgtcatttcaatataacagtacctattatcatatc |
45608 |
T |
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| Q |
101 |
aaatcataaca |
111 |
Q |
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||||||||||| |
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| T |
45609 |
aaatcataaca |
45619 |
T |
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