View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704_1D_low_23 (Length: 248)

Name: NF3704_1D_low_23
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704_1D_low_23
NF3704_1D_low_23
[»] chr5 (12 HSPs)
chr5 (17-170)||(37705510-37705663)
chr5 (165-226)||(37704454-37704515)
chr5 (165-226)||(37698636-37698697)
chr5 (40-126)||(37438300-37438386)
chr5 (41-121)||(37700945-37701026)
chr5 (166-225)||(37698974-37699035)
chr5 (137-170)||(17818338-17818371)
chr5 (133-169)||(10528937-10528973)
chr5 (168-226)||(37437520-37437578)
chr5 (133-166)||(1171109-1171142)
chr5 (134-170)||(12555757-12555794)
chr5 (133-169)||(15552649-15552685)
[»] chr4 (17 HSPs)
chr4 (40-129)||(16840263-16840352)
chr4 (23-90)||(16840376-16840443)
chr4 (133-170)||(24879434-24879471)
chr4 (133-170)||(24880898-24880935)
chr4 (133-170)||(47563211-47563248)
chr4 (132-166)||(4558606-4558640)
chr4 (132-170)||(5101368-5101405)
chr4 (132-166)||(8529567-8529601)
chr4 (132-166)||(11853864-11853898)
chr4 (132-166)||(15312616-15312650)
chr4 (132-166)||(16688793-16688827)
chr4 (132-166)||(18587265-18587299)
chr4 (132-170)||(24446501-24446538)
chr4 (133-166)||(15317257-15317290)
chr4 (133-166)||(15831445-15831478)
chr4 (133-166)||(16489648-16489681)
chr4 (133-169)||(18709003-18709039)
[»] chr7 (10 HSPs)
chr7 (132-170)||(24748998-24749036)
chr7 (132-170)||(444006-444045)
chr7 (131-166)||(7464363-7464398)
chr7 (132-166)||(25351650-25351684)
chr7 (132-170)||(25357341-25357379)
chr7 (132-166)||(25405712-25405746)
chr7 (132-169)||(7349116-7349153)
chr7 (132-169)||(7351490-7351527)
chr7 (133-166)||(30247270-30247303)
chr7 (133-170)||(31434892-31434929)
[»] chr6 (9 HSPs)
chr6 (132-170)||(10584376-10584414)
chr6 (132-166)||(17694700-17694734)
chr6 (132-166)||(25941967-25942001)
chr6 (133-166)||(3577338-3577371)
chr6 (133-170)||(3629711-3629747)
chr6 (133-166)||(13883773-13883806)
chr6 (133-166)||(25465754-25465787)
chr6 (133-166)||(31248544-31248577)
chr6 (133-169)||(5273055-5273091)
[»] chr3 (15 HSPs)
chr3 (132-170)||(29897526-29897564)
chr3 (133-170)||(39715846-39715883)
chr3 (133-170)||(51674608-51674645)
chr3 (133-171)||(3307139-3307176)
chr3 (132-166)||(6303609-6303643)
chr3 (132-166)||(10099923-10099957)
chr3 (132-166)||(10897303-10897337)
chr3 (132-166)||(22625828-22625862)
chr3 (140-170)||(53468302-53468332)
chr3 (133-170)||(3330184-3330221)
chr3 (133-166)||(10093923-10093956)
chr3 (133-166)||(10200805-10200838)
chr3 (133-166)||(10594883-10594916)
chr3 (133-170)||(24980090-24980126)
chr3 (133-166)||(27544586-27544619)
[»] chr2 (13 HSPs)
chr2 (132-170)||(22707594-22707632)
chr2 (131-166)||(17462734-17462769)
chr2 (132-171)||(20054609-20054648)
chr2 (132-166)||(2736503-2736537)
chr2 (133-171)||(20049866-20049904)
chr2 (132-170)||(22287180-22287217)
chr2 (132-166)||(22717082-22717116)
chr2 (133-170)||(17849491-17849528)
chr2 (133-170)||(17943830-17943867)
chr2 (133-170)||(19008014-19008051)
chr2 (133-166)||(22712374-22712407)
chr2 (133-166)||(27517491-27517524)
chr2 (133-166)||(33670817-33670850)
[»] chr8 (11 HSPs)
chr8 (130-170)||(25952974-25953013)
chr8 (132-166)||(4823550-4823584)
chr8 (132-170)||(14419034-14419071)
chr8 (132-166)||(28891062-28891096)
chr8 (132-166)||(28895799-28895833)
chr8 (132-170)||(35872300-35872337)
chr8 (133-170)||(183274-183310)
chr8 (133-166)||(591093-591126)
chr8 (133-166)||(25684939-25684972)
chr8 (133-166)||(29554705-29554738)
chr8 (133-169)||(28251410-28251446)
[»] scaffold1050 (1 HSPs)
scaffold1050 (132-166)||(2918-2952)
[»] scaffold0209 (1 HSPs)
scaffold0209 (132-166)||(16884-16918)
[»] chr1 (6 HSPs)
chr1 (132-166)||(9522023-9522057)
chr1 (132-170)||(21353196-21353234)
chr1 (132-170)||(28206911-28206948)
chr1 (132-170)||(41647319-41647356)
chr1 (132-170)||(50078634-50078672)
chr1 (133-169)||(13762239-13762275)
[»] scaffold0131 (1 HSPs)
scaffold0131 (133-166)||(17791-17824)
[»] scaffold0006 (1 HSPs)
scaffold0006 (133-166)||(231412-231445)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 37705510 - 37705663
Alignment:
Q  17 acatcattgcattcttagaactagattcaaactcacgacatctagttaagctgtaagagatcactttcgtcttaccgaagtaatcttgggttattttccg 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705510 acattattgcattcttagaactagattcaaactcacgacatctagttaagttgtaagagatcactttcgtcttaccgaagtaatcttgggttattttccg 37705609  T
Q  117 ttgttttaatcaaacttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705610 ttgttttaatcaaacttgttgtgaattcgatgagaaaaccacaccaataacaaa 37705663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 37704515 - 37704454
Alignment:
Q  165 aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704515 aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt 37704454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 37698697 - 37698636
Alignment:
Q  165 aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt 226  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  37698697 aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt 37698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 37438300 - 37438386
Alignment:
Q  40 gattcaaactcacgacatctagttaagctgtaagagatcactttcgtcttaccgaagtaatcttgggttattttccgttgttttaat 126  Q
    ||||||||||||||||||||  ||| |||| ||||| |||||||| ||||||| || |||||||||||||||||  |||||||||||    
T  37438300 gattcaaactcacgacatctgattaggctggaagaggtcactttcatcttacccaactaatcttgggttattttatgttgttttaat 37438386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 37700945 - 37701026
Alignment:
Q  41 attcaaactcacgacatctagttaagctgtaagagatcactttcgtcttaccgaagtaatc-ttgggttattttccgttgtt 121  Q
    ||||||||||||||||||  ||||||||| |||| ||||||||| ||||||  || ||||| |||||||||||||| |||||    
T  37700945 attcaaactcacgacatccggttaagctggaagatatcactttcatcttactcaaataatctttgggttattttcccttgtt 37701026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 37699035 - 37698974
Alignment:
Q  166 acaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg 225  Q
    ||||||||||||||||| |||||||||  |||| |||||||||||||| |||| ||||||||    
T  37699035 acaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg 37698974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 17818338 - 17818371
Alignment:
Q  137 gtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||||||||||||||    
T  17818338 gtgaattcgatgagaaaaccacaccaataacaaa 17818371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 10528937 - 10528973
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10528937 tgttgtgaattcgatgagaaaatcacaccaataacaa 10528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 37437578 - 37437520
Alignment:
Q  168 aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt 226  Q
    |||| |||||||||  |||||| |||||| ||||||||||||||||||  |||||||||    
T  37437578 aaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt 37437520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 1171142 - 1171109
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  1171142 tgttgtgaattcgttgagaaaaccacaccaataa 1171109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 12555757 - 12555794
Alignment:
Q  134 gttgtgaattcgatgagaaaac-cacaccaataacaaa 170  Q
    |||||||||||||||||||||| |||||||||||||||    
T  12555757 gttgtgaattcgatgagaaaactcacaccaataacaaa 12555794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 15552685 - 15552649
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  15552685 tgttgtgaattcgatgaaaaaatcacaccaataacaa 15552649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 16840352 - 16840263
Alignment:
Q  40 gattcaaactcacgacatctagttaagctgtaagagatcactttcgtcttaccgaagtaatcttgggttattttccgttgttttaatcaa 129  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  16840352 gattcaaactcacgacatctggttaagctggaagagatcactttcatcttacccaagtaatcatgggttattttccgttgttttaatcaa 16840263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 16840443 - 16840376
Alignment:
Q  23 ttgcattcttagaactagattcaaactcacgacatctagttaagctgtaagagatcactttcgtctta 90  Q
    ||||||||| |||||  |||||||||||||| ||||| ||||||||| |||||||||||||| |||||    
T  16840443 ttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatctta 16840376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 24879471 - 24879434
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  24879471 tgttgtgaattcgatgaaaaaaccacaccaataacaaa 24879434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 24880935 - 24880898
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  24880935 tgttgtgaattcgatgaaaaaaccacaccaataacaaa 24880898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 47563248 - 47563211
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  47563248 tgttgtgaatttgatgagaaaaccacaccaataacaaa 47563211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 4558640 - 4558606
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  4558640 ttgttgtgaattcgttgagaaaaccacaccaataa 4558606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 5101405 - 5101368
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  5101405 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 5101368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 8529601 - 8529567
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  8529601 ttgttgtgaattcgttgagaaaaccacaccaataa 8529567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 11853898 - 11853864
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  11853898 ttgttgtgaattcgttgagaaaaccacaccaataa 11853864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 15312650 - 15312616
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  15312650 ttgttgtgaattcgttgagaaaaccacaccaataa 15312616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 16688793 - 16688827
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  16688793 ttgttgtgaattcgttgagaaaaccacaccaataa 16688827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 18587299 - 18587265
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  18587299 ttgttgtgaattcgttgagaaaaccacaccaataa 18587265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 24446501 - 24446538
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24446501 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 24446538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 15317290 - 15317257
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  15317290 tgttgtgaattcgttgagaaaaccacaccaataa 15317257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 15831478 - 15831445
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  15831478 tgttgtgaattcgttgagaaaaccacaccaataa 15831445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 16489681 - 16489648
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  16489681 tgttgtgaattcgttgagaaaaccacaccaataa 16489648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 18709003 - 18709039
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  18709003 tgttgtgaatttgatgaaaaaaccacaccaataacaa 18709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 24749036 - 24748998
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24749036 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 24748998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 444045 - 444006
Alignment:
Q  132 ttgttgtgaattcgatgagaaaac-cacaccaataacaaa 170  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  444045 ttgttgtgaattcgatgagaaaactcacaccaataacaaa 444006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 7464363 - 7464398
Alignment:
Q  131 cttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7464363 cttgttgtgaattcgttgagaaaaccacaccaataa 7464398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 25351684 - 25351650
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  25351684 ttgttgtgaattcgttgagaaaaccacaccaataa 25351650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 25357379 - 25357341
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  25357379 ttgttgtcaattcgttgagaaaaccacaccaataacaaa 25357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 25405746 - 25405712
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  25405746 ttgttgtgaattcgttgagaaaaccacaccaataa 25405712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 7349116 - 7349153
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  7349116 ttgttgtgaattcgatgaaaaaatcacaccaataacaa 7349153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 7351490 - 7351527
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  7351490 ttgttgtgaattcgatgaaaaaatcacaccaataacaa 7351527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 30247303 - 30247270
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  30247303 tgttgtgaattcgttgagaaaaccacaccaataa 30247270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 31434892 - 31434929
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  31434892 tgttgcgaattcgatgagaaaatcacaccaataacaaa 31434929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 10584414 - 10584376
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10584414 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 10584376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 17694700 - 17694734
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  17694700 ttgttgtgaattcgttgagaaaaccacaccaataa 17694734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 25942001 - 25941967
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  25942001 ttgttgtgaattcgttgagaaaaccacaccaataa 25941967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 3577338 - 3577371
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  3577338 tgttgtgaattcgttgagaaaaccacaccaataa 3577371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 3629711 - 3629747
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3629711 tgttgtgaattcgatgagaaaa-cacaccaataacaaa 3629747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 13883806 - 13883773
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  13883806 tgttgtgaattcgttgagaaaaccacaccaataa 13883773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 25465754 - 25465787
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  25465754 tgttgtgaattcgttgagaaaaccacaccaataa 25465787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 31248544 - 31248577
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  31248544 tgttgtgaattcgttgagaaaaccacaccaataa 31248577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 5273055 - 5273091
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  5273055 tgttgtgaattcgatgaaaaaatcacaccaataacaa 5273091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 29897526 - 29897564
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29897526 ttgttgtgaattcgttgagaaaaccacaccaataacaaa 29897564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 39715883 - 39715846
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||||| |||||||||||||    
T  39715883 tgttgtgaattcgatgagaaaaccgcaccaataacaaa 39715846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 51674608 - 51674645
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||| |||||||||||||||    
T  51674608 tgttgtgaattcgatgagaaaatcacaccaataacaaa 51674645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 3307176 - 3307139
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaaa 171  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3307176 tgttgtgaattcgatgagaaaa-cacaccaataacaaaa 3307139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 6303643 - 6303609
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  6303643 ttgttgtgaattcgttgagaaaaccacaccaataa 6303609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 10099923 - 10099957
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  10099923 ttgttgtgaattcgttgagaaaaccacaccaataa 10099957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 10897337 - 10897303
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  10897337 ttgttgtgaattcgttgagaaaaccacaccaataa 10897303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 22625828 - 22625862
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  22625828 ttgttgtgaattcgttgagaaaaccacaccaataa 22625862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 53468302 - 53468332
Alignment:
Q  140 aattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||||||||||||    
T  53468302 aattcgatgagaaaaccacaccaataacaaa 53468332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 3330221 - 3330184
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||| || |||||||||||||||||||||    
T  3330221 tgttgtgaattcgttgtgaaaaccacaccaataacaaa 3330184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 10093923 - 10093956
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  10093923 tgttgtgaattcgttgagaaaaccacaccaataa 10093956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 10200805 - 10200838
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  10200805 tgttgtgaattcgttgagaaaaccacaccaataa 10200838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 10594883 - 10594916
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  10594883 tgttgtgaattcgttgagaaaaccacaccaataa 10594916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 24980126 - 24980090
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||| |||||||||||||||    
T  24980126 tgttgtgaattcgatgagaaaa-cacaccaataacaaa 24980090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 27544619 - 27544586
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  27544619 tgttgtgaattcgttgagaaaaccacaccaataa 27544586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 22707594 - 22707632
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  22707594 ttgttgcgaattcgatgagaaaaccacaccaataacaaa 22707632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 17462769 - 17462734
Alignment:
Q  131 cttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17462769 cttgttgtgaattcgttgagaaaaccacaccaataa 17462734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 20054609 - 20054648
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaaa 171  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  20054609 ttgttgtgaattcgttgagaaaaccacaccaataaaaaaa 20054648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 2736537 - 2736503
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  2736537 ttgttgtgaattcgttgagaaaaccacaccaataa 2736503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 20049866 - 20049904
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaaa 171  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  20049866 tgttgtgaattcgttgagaaaaccacaccaataaaaaaa 20049904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 22287180 - 22287217
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  22287180 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 22287217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 22717082 - 22717116
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  22717082 ttgttgtgaattcgttgagaaaaccacaccaataa 22717116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 17849528 - 17849491
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  17849528 tgttgtgaattcgatgaaaaaatcacaccaataacaaa 17849491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 17943867 - 17943830
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  17943867 tgttgtgaattcgttgagaaaaacacaccaataacaaa 17943830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 19008051 - 19008014
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  19008051 tgttgtgaattcgatgaaaaaatcacaccaataacaaa 19008014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 22712374 - 22712407
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  22712374 tgttgtgaattcgttgagaaaaccacaccaataa 22712407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 27517491 - 27517524
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  27517491 tgttgtgaattcgttgagaaaaccacaccaataa 27517524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 33670817 - 33670850
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  33670817 tgttgtgaattcgttgagaaaaccacaccaataa 33670850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 25953013 - 25952974
Alignment:
Q  130 acttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  25953013 acttgttgtgaattcgatgagaaaa-cacaccaataacaaa 25952974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 4823550 - 4823584
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  4823550 ttgttgtgaattcgttgagaaaaccacaccaataa 4823584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 14419034 - 14419071
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  14419034 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 14419071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 28891096 - 28891062
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  28891096 ttgttgtgaattcgttgagaaaaccacaccaataa 28891062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 28895833 - 28895799
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  28895833 ttgttgtgaattcgttgagaaaaccacaccaataa 28895799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 35872300 - 35872337
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  35872300 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 35872337  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 183310 - 183274
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||||||||||||||||||| |||||||||||||||    
T  183310 tgttgtgaattcgatgagaaaa-cacaccaataacaaa 183274  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 591126 - 591093
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  591126 tgttgtgaattcgttgagaaaaccacaccaataa 591093  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 25684972 - 25684939
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  25684972 tgttgtgaattcgttgagaaaaccacaccaataa 25684939  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 29554705 - 29554738
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  29554705 tgttgtgaattcgttgagaaaaccacaccaataa 29554738  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 28251410 - 28251446
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  28251410 tgttgtgaattcgatgaaaaaatcacaccaataacaa 28251446  T

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Target: scaffold1050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 2918 - 2952
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  2918 ttgttgtgaattcgttgagaaaaccacaccaataa 2952  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 16884 - 16918
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  16884 ttgttgtgaattcgttgagaaaaccacaccaataa 16918  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 9522057 - 9522023
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  9522057 ttgttgtgaattcgttgagaaaaccacaccaataa 9522023  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 21353196 - 21353234
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  21353196 ttgttatgaattcgttgagaaaaccacaccaataacaaa 21353234  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 28206911 - 28206948
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  28206911 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 28206948  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 41647356 - 41647319
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  41647356 ttgttgtgaattcgatgagaaaa-cacaccaataacaaa 41647319  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 50078634 - 50078672
Alignment:
Q  132 ttgttgtgaattcgatgagaaaaccacaccaataacaaa 170  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  50078634 ttgttgcgaattcgatgagaaaatcacaccaataacaaa 50078672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 13762275 - 13762239
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataacaa 169  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  13762275 tgttgcgaattcgatgagaaaatcacaccaataacaa 13762239  T

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Target: scaffold0131 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 17824 - 17791
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  17824 tgttgtgaattcgttgagaaaaccacaccaataa 17791  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 231445 - 231412
Alignment:
Q  133 tgttgtgaattcgatgagaaaaccacaccaataa 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  231445 tgttgtgaattcgttgagaaaaccacaccaataa 231412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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