View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_27 (Length: 244)
Name: NF3704_1D_low_27
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_27 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 46238503 - 46238666
Alignment:
| Q |
81 |
tgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctcc |
180 |
Q |
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| T |
46238503 |
tgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctct |
46238602 |
T |
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| Q |
181 |
ctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgagg |
244 |
Q |
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| T |
46238603 |
gtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgagg |
46238666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 3456155 - 3455992
Alignment:
| Q |
81 |
tgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctcc |
180 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3456155 |
tgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcttct |
3456056 |
T |
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| Q |
181 |
ctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgagg |
244 |
Q |
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| T |
3456055 |
gtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgagg |
3455992 |
T |
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