View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_30 (Length: 237)
Name: NF3704_1D_low_30
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 12171428 - 12171211
Alignment:
| Q |
13 |
atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct |
110 |
Q |
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| T |
12171428 |
atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct |
12171329 |
T |
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| Q |
111 |
tgtcctcggtaactacagttccagcacaagcagttgacaaaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc |
210 |
Q |
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| T |
12171328 |
tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc |
12171229 |
T |
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| Q |
211 |
cgacaaagaaaatgagaa |
228 |
Q |
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|||||||||||||||||| |
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| T |
12171228 |
cgacaaagaaaatgagaa |
12171211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 12415856 - 12415639
Alignment:
| Q |
13 |
atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct |
110 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
12415856 |
atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct |
12415757 |
T |
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| Q |
111 |
tgtcctcggtaactacagttccagcacaagcagttgacaaaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc |
210 |
Q |
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| T |
12415756 |
tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc |
12415657 |
T |
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| Q |
211 |
cgacaaagaaaatgagaa |
228 |
Q |
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|||||||||||||||||| |
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| T |
12415656 |
cgacaaagaaaatgagaa |
12415639 |
T |
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