View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704_1D_low_35 (Length: 218)

Name: NF3704_1D_low_35
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704_1D_low_35
NF3704_1D_low_35
[»] chr1 (3 HSPs)
chr1 (20-206)||(41375346-41375532)
chr1 (19-206)||(22081055-22081242)
chr1 (50-117)||(22799785-22799852)
[»] chr3 (4 HSPs)
chr3 (19-206)||(10787238-10787425)
chr3 (19-206)||(14688368-14688555)
chr3 (19-206)||(7360370-7360557)
chr3 (52-154)||(10158052-10158154)
[»] chr8 (2 HSPs)
chr8 (19-206)||(1730056-1730243)
chr8 (53-118)||(22338584-22338649)
[»] chr7 (2 HSPs)
chr7 (19-206)||(14328899-14329086)
chr7 (34-189)||(18166551-18166706)
[»] chr2 (4 HSPs)
chr2 (19-206)||(24954790-24954977)
chr2 (34-189)||(23195774-23195929)
chr2 (52-154)||(23621413-23621515)
chr2 (52-189)||(22643440-22643577)
[»] scaffold0108 (1 HSPs)
scaffold0108 (34-153)||(39009-39128)
[»] scaffold0064 (1 HSPs)
scaffold0064 (34-153)||(32610-32729)
[»] scaffold0051 (1 HSPs)
scaffold0051 (34-189)||(74533-74688)
[»] scaffold0319 (1 HSPs)
scaffold0319 (52-154)||(13680-13782)
[»] scaffold0040 (1 HSPs)
scaffold0040 (52-154)||(36101-36203)
[»] chr4 (3 HSPs)
chr4 (52-154)||(13284332-13284434)
chr4 (52-154)||(14562190-14562292)
chr4 (50-114)||(14741960-14742024)
[»] scaffold0022 (1 HSPs)
scaffold0022 (52-154)||(28736-28838)
[»] scaffold0304 (2 HSPs)
scaffold0304 (54-118)||(12276-12340)
scaffold0304 (54-118)||(18027-18091)
[»] scaffold0282 (1 HSPs)
scaffold0282 (50-117)||(2148-2215)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
Q  20 tcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattct 119  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  41375532 tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct 41375433  T
Q  120 tcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||    
T  41375432 tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat 41375346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 22081055 - 22081242
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    ||||||||| |||  ||| |||||| || ||| ||| |||||||||||||||||||| |||||||| || ||||||||||| ||| ||||||| || |||    
T  22081055 atcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttc 22081154  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    || |  ||||||| ||| ||||||||||| ||||||   |||| ||| || |||||||| || |||||||| || || ||||||||||    
T  22081155 ttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatgatgtccat 22081242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 22799852 - 22799785
Alignment:
Q  50 acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt 117  Q
    ||||| ||||||||||||||||  ||||| ||||| || ||| ||||||||||| |||||||||||||    
T  22799852 acaccatcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt 22799785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 10787238 - 10787425
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  10787238 atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattc 10787337  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    | |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||    
T  10787338 tgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtccat 10787425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 14688555 - 14688368
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||| ||||||    
T  14688555 atcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcatccatggcattc 14688456  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  14688455 ttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtccat 14688368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 7360557 - 7360370
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    |||||||||||||| ||||| |||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||    
T  7360557 atcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc 7360458  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    ||||| ||||||||||  ||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||    
T  7360457 ttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtccat 7360370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 10158052 - 10158154
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    ||||||||||||||||| || |||||| ||||| || ||| |||| |||||| |||||||||||||||| | | ||   | ||||||||||||||| |||    
T  10158052 accgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccatcatccatagcattcttgagcgaatacttgacagtaggaatgcatggc 10158151  T
Q  152 tca 154  Q
    |||    
T  10158152 tca 10158154  T

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Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 1730056 - 1730243
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    ||||||||||||| |||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  1730056 atcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattc 1730155  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    |||| |||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| || ||||||||||    
T  1730156 ttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtccat 1730243  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 22338649 - 22338584
Alignment:
Q  53 ccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    ||||| || ||||||||||  ||||| ||||| || ||| ||||||||||| ||||||||||||||    
T  22338649 ccgtcgagtgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc 22338584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 14329086 - 14328899
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    |||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||    
T  14329086 atcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc 14328987  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    |||| |||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  14328986 ttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtccat 14328899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 18166706 - 18166551
Alignment:
Q  34 agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg 133  Q
    |||||||||| |  ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| ||| | | |||||  | |    
T  18166706 agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgcttg 18166607  T
Q  134 acagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca 189  Q
    || ||||||||||| ||||||   ||||||||||| || || || || ||||||||    
T  18166606 acggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgca 18166551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 24954790 - 24954977
Alignment:
Q  19 atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    |||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||    
T  24954790 atcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc 24954889  T
Q  119 ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat 206  Q
    |||| ||| |||||||  ||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||    
T  24954890 ttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat 24954977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 23195929 - 23195774
Alignment:
Q  34 agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg 133  Q
    |||||||||| |  ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||  ||| | | |||||  | |    
T  23195929 agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttcctaagcaaacacttg 23195830  T
Q  134 acagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca 189  Q
    || ||||||||||| ||||||  |||||||||||| || || || || ||||||||    
T  23195829 acggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgca 23195774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 23621515 - 23621413
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||||||| | | ||||| ||  || ||||||||||| |||    
T  23621515 accgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcattcctaagcaaacgtttaacggtaggaatgcatggc 23621416  T
Q  152 tca 154  Q
    |||    
T  23621415 tca 23621413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 22643440 - 22643577
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||| || ||| | | |||||  | |||| |||||||||| |||    
T  22643440 accgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcctaagcaaacgcttgacaataggaatgcatggc 22643539  T
Q  152 tcagggtccagcatgaactgggtacaccttaaaatgca 189  Q
    |||   ||||||||||| || || || || ||||||||    
T  22643540 tcaacatccagcatgaattgagtgcatctcaaaatgca 22643577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 39009 - 39128
Alignment:
Q  34 agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg 133  Q
    |||||||||| |  ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| ||| | | ||||| || |    
T  39009 agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttg 39108  T
Q  134 acagtaggaatgcagggctc 153  Q
    || ||||||||||| |||||    
T  39109 acggtaggaatgcatggctc 39128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 32729 - 32610
Alignment:
Q  34 agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg 133  Q
    |||||||||| |  ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| ||| | | ||||| || |    
T  32729 agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttg 32630  T
Q  134 acagtaggaatgcagggctc 153  Q
    || ||||||||||| |||||    
T  32629 acggtaggaatgcatggctc 32610  T

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Target: scaffold0051 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 74533 - 74688
Alignment:
Q  34 agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg 133  Q
    |||||||||| || ||| ||||||||| || |||| || |||||| ||||| || ||||||||||| ||| |||||||||| ||||| | ||||   | |    
T  74533 agcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcttaagcaaatgcttg 74632  T
Q  134 acagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca 189  Q
    || ||||||||||| ||||||   || |||||||| ||||| || || ||||||||    
T  74633 acggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgca 74688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 13680 - 13782
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||| ||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||||||| | | |||||  | ||| ||||||||||| |||    
T  13680 accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc 13779  T
Q  152 tca 154  Q
    |||    
T  13780 tca 13782  T

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Target: scaffold0040 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 36101 - 36203
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||||||||||||||| |||||| ||||| || ||| | || || ||| | |||||||||||| | | ||||| || ||||||||||||||| |||    
T  36101 accgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagcattcctaagcaaacgtttgacagtaggaatgcatggc 36200  T
Q  152 tca 154  Q
    |||    
T  36201 tca 36203  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 13284434 - 13284332
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||||||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||| ||| | | |||||  | ||| ||||||||||| |||    
T  13284434 accgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcgttcctaagcaaacgcttgacggtaggaatgcatggc 13284335  T
Q  152 tca 154  Q
    |||    
T  13284334 tca 13284332  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 14562292 - 14562190
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||| ||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||||||| | | |||||  | ||| ||||||||||| |||    
T  14562292 accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc 14562193  T
Q  152 tca 154  Q
    |||    
T  14562192 tca 14562190  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 14742024 - 14741960
Alignment:
Q  50 acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagc 114  Q
    ||||| ||||||||||||||||  ||||| ||||| || ||| ||||||||||| ||||||||||    
T  14742024 acaccatcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc 14741960  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 28736 - 28838
Alignment:
Q  52 accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc 151  Q
    |||||||||||||||||||| |||||| ||||| || ||| | ||||||||| | |||||||| ||| | | |||||  | ||| ||||||||||| |||    
T  28736 accgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttcctaagcaaacgcttgacggtaggaatgcatggc 28835  T
Q  152 tca 154  Q
    |||    
T  28836 tca 28838  T

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Target: scaffold0304 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 12340 - 12276
Alignment:
Q  54 cgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    |||||||||||||||||| |||||  ||||| || ||| ||||||||||| | ||||||||||||    
T  12340 cgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc 12276  T

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Target: scaffold0304; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 18091 - 18027
Alignment:
Q  54 cgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc 118  Q
    |||||||||||||||||| |||||  ||||| || ||| ||||||||||| | ||||||||||||    
T  18091 cgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc 18027  T

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Target: scaffold0282 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 2215 - 2148
Alignment:
Q  50 acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt 117  Q
    ||||| ||||||||||||||||  ||||| ||||| ||  || ||||||||||| |||||||||||||    
T  2215 acaccatcaagcgccctcagcatgacatcaaagtagagcacgctcacagagccagcatccatagcatt 2148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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