View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_37 (Length: 216)
Name: NF3704_1D_low_37
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_37 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 77127 - 76957
Alignment:
| Q |
7 |
tgatgaaagaaaagaaaaacatttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagaagaagatnnnn |
106 |
Q |
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| T |
77127 |
tgatgaaagaaaagaaaaacatttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagatgaagataaaa |
77028 |
T |
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| Q |
107 |
nnnnnnnnnnnntgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgct |
177 |
Q |
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| T |
77027 |
aagcacaaaaaatgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgct |
76957 |
T |
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Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 40889157 - 40889327
Alignment:
| Q |
7 |
tgatgaaagaaaagaaaaacatttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagaagaagatnnnn |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40889157 |
tgatgaaagaaaagaaaaacatttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagatgaagataaaa |
40889256 |
T |
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| Q |
107 |
nnnnnnnnnnnntgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgct |
177 |
Q |
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| T |
40889257 |
aagcacaaaaaatgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgct |
40889327 |
T |
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