View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_41 (Length: 211)
Name: NF3704_1D_low_41
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 31636458 - 31636262
Alignment:
| Q |
1 |
ttgaataactttttattggatatatgtattacaaaattcaatgttggatggaagtttatatcatattggaccttatatataaatttttactaaatctaaa |
100 |
Q |
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| T |
31636458 |
ttgaataactttttattggatatatgtattacaaaattcaatgttggatggaagtttatatcatattgaaccttatatataaatttttactaaatctaaa |
31636359 |
T |
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| Q |
101 |
aatcatttgatatatcattgagatatgtgcgggacagaatgttgggcggtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatgt |
197 |
Q |
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| T |
31636358 |
aatcatttgatatatcattgagatatgtgcgggacagaatgttgggcggtaaagaaccaacacaaaaataaattatgcgtagcagagatgatgatgt |
31636262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 10775836 - 10775770
Alignment:
| Q |
131 |
gggacagaatgttgggcggtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatgt |
197 |
Q |
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| T |
10775836 |
gggaaagagtgttgggcggtaaagaactaatgcaaaaataaattaagcgtagcagagatgatgatgt |
10775770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 36514602 - 36514553
Alignment:
| Q |
148 |
ggtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatgt |
197 |
Q |
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| T |
36514602 |
ggtaaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgt |
36514553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 5335792 - 5335856
Alignment:
| Q |
133 |
gacagaatgttgggcggtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatgt |
197 |
Q |
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| T |
5335792 |
gacagagtgttgggcggtaaagaacgggcacaaacataagttaagtgtagcagagatgaggatgt |
5335856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 24550083 - 24550035
Alignment:
| Q |
149 |
gtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatgt |
197 |
Q |
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| T |
24550083 |
gtaaggaaccaacacaaaaataaattatgcgtagcagagatgaggatgt |
24550035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 40419510 - 40419572
Alignment:
| Q |
134 |
acagaatgttgggcggtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatg |
196 |
Q |
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| T |
40419510 |
acagagtgttgggtggtaaagaaccaacacgaacataaagtaagtgtagcagagatgaggatg |
40419572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 32402533 - 32402581
Alignment:
| Q |
149 |
gtaaagaactaacacaaaaataaattatgtgtagcagagatgatgatgt |
197 |
Q |
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| T |
32402533 |
gtaaagaaccaacacaaaaataaatttagtgtagtagagatgaggatgt |
32402581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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