View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_45 (Length: 207)
Name: NF3704_1D_low_45
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 3e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 8296992 - 8297178
Alignment:
| Q |
1 |
gaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatact |
100 |
Q |
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| T |
8296992 |
gaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatact |
8297091 |
T |
|
| Q |
101 |
ttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaat |
187 |
Q |
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| T |
8297092 |
ttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaat |
8297178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8300570 - 8300755
Alignment:
| Q |
1 |
gaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatact |
100 |
Q |
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| T |
8300570 |
gaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcattttgtactccatagtttgcatttcaactctgatact |
8300669 |
T |
|
| Q |
101 |
ttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaa |
186 |
Q |
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| T |
8300670 |
ttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaa |
8300755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18279658 - 18279473
Alignment:
| Q |
1 |
gaaattaacaaggcaagaaattttactagagataaatccgcataa---agcttttgagaaaattcattttaccctccatagtttgcatttcaactctgat |
97 |
Q |
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| T |
18279658 |
gaaattaacaagccaagaaattttactcgagataagtacgcataataaagcttttgagacaattcaaattatcctccatagtttgcttttcaactttgac |
18279559 |
T |
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| Q |
98 |
actttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatc |
183 |
Q |
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| T |
18279558 |
actttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatc |
18279473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 1145194 - 1145356
Alignment:
| Q |
1 |
gaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatact |
100 |
Q |
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||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||||||| |
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| T |
1145194 |
gaaattaaccaggcaagatattttactcgagataaatccgcataaagctttcgagccaaatcattttatcctccatagtttgcatttcaattctgatact |
1145293 |
T |
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| Q |
101 |
ttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcag |
163 |
Q |
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||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |
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|
| T |
1145294 |
ttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcag |
1145356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 21120586 - 21120537
Alignment:
| Q |
70 |
cctccatagtttgcatttcaactctgatactttctaagttcccttttaat |
119 |
Q |
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| T |
21120586 |
cctccatagtttgcatttcaactctgagactttccaagttctcgtttaat |
21120537 |
T |
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