View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704_1D_low_50 (Length: 201)

Name: NF3704_1D_low_50
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704_1D_low_50
NF3704_1D_low_50
[»] chr6 (3 HSPs)
chr6 (3-188)||(25822895-25823080)
chr6 (11-178)||(16170599-16170762)
chr6 (3-86)||(14640535-14640618)
[»] chr3 (2 HSPs)
chr3 (3-188)||(15408727-15408912)
chr3 (3-62)||(1052110-1052169)
[»] chr5 (1 HSPs)
chr5 (3-86)||(21736451-21736534)
[»] scaffold0437 (1 HSPs)
scaffold0437 (8-86)||(7216-7294)
[»] chr7 (2 HSPs)
chr7 (137-188)||(19159900-19159951)
chr7 (137-188)||(20759299-20759350)
[»] chr2 (1 HSPs)
chr2 (137-183)||(21862014-21862060)
[»] scaffold0012 (1 HSPs)
scaffold0012 (23-80)||(51690-51747)
[»] chr1 (1 HSPs)
chr1 (23-139)||(12630496-12630612)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 25822895 - 25823080
Alignment:
Q  3 actgtagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaattacagaagagactaaca 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||| ||||||||||| ||||||    
T  25822895 actgcagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagtacatacgttgaattatttacagaagaggctaaca 25822994  T
Q  103 atgttcctgcatgtgtagcagctcttcagcatcatgatgagacacagacacatgttttatctccggtcaaacaaatcactcctgat 188  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  25822995 atgttcctgcacgtgtagcacctcttcagcatcatgatgagacacagacacatgttttatctccggtcaaacaaatgactcttgat 25823080  T

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Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 16170599 - 16170762
Alignment:
Q  11 agctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaattacagaagagactaacaatgttcct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  16170599 agctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcacagacgttgaattaattacagaagaggctaacaatgttcct 16170698  T
Q  111 gcatgtgtagcagctcttcagcatcatgatgagacacagacacatgttttatctccggtcaaacaaat 178  Q
    ||| |||||||| || |||||||||||||||||||    |||||||||||||||||||||||||||||    
T  16170699 gcacgtgtagcaccttttcagcatcatgatgagac----acacatgttttatctccggtcaaacaaat 16170762  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 14640535 - 14640618
Alignment:
Q  3 actgtagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaatt 86  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || || | || ||||||||||||    
T  14640535 actgcagcagctgagccgctctttacggatgtcatggccttagaagcacaaacacagacaaatcgcacggatgttgaattaatt 14640618  T

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Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 15408727 - 15408912
Alignment:
Q  3 actgtagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaattacagaagagactaaca 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||| ||||||||||| ||||||    
T  15408727 actgcagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagtacaaacgttgaattatttacagaagaggctaaca 15408826  T
Q  103 atgttcctgcatgtgtagcagctcttcagcatcatgatgagacacagacacatgttttatctccggtcaaacaaatcactcctgat 188  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  15408827 atgttcctgcacgtgtagcacctcttcagcatcatgatgagacacagacacatgttttatctccggtcaaacaaatgactcttgat 15408912  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 1052169 - 1052110
Alignment:
Q  3 actgtagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagaca 62  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||||||| || ||||||    
T  1052169 actgcagcagctcagcccctctttactgatgtcatggaattagaagcacatactcagaca 1052110  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 21736534 - 21736451
Alignment:
Q  3 actgtagcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaatt 86  Q
    |||| |||| |||||||||||||||||||||||||||  ||||||||||||||||||||| || || |||| ||||||||||||    
T  21736534 actgcagcaactgagccgctctttacggatgtcatggccttagaagcacaaacacagacaaatcgcacagatgttgaattaatt 21736451  T

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Target: scaffold0437 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 7216 - 7294
Alignment:
Q  8 agcagctgagccgctctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaatt 86  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || || | || ||||||||||||    
T  7216 agcagctgagccgctctttacggatgtcatggccttagaagcacaaacacagacaaatcgcacggatgttgaattaatt 7294  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 19159900 - 19159951
Alignment:
Q  137 tgatgagacacagacacatgttttatctccggtcaaacaaatcactcctgat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19159900 tgatgagacacagacacatgttttatctccggtcaaacaaatcactcatgat 19159951  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 20759299 - 20759350
Alignment:
Q  137 tgatgagacacagacacatgttttatctccggtcaaacaaatcactcctgat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20759299 tgatgagacacagacacatgttttatctccggtcaaacaaatcactcatgat 20759350  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 21862014 - 21862060
Alignment:
Q  137 tgatgagacacagacacatgttttatctccggtcaaacaaatcactc 183  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  21862014 tgatgagacaccgacacatgttttatctccgatcaaacaaatcactc 21862060  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 51690 - 51747
Alignment:
Q  23 ctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaa 80  Q
    ||||||||||||||||||||| ||||  |||||||||||| |||||||||| ||||||    
T  51690 ctttacggatgtcatggaattcgaagttcaaacacagacaaatagcgcagaagttgaa 51747  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 12630612 - 12630496
Alignment:
Q  23 ctttacggatgtcatggaattagaagcacaaacacagacacatagcgcagacgttgaattaattacagaagagactaacaatgttcctgcatgtgtagca 122  Q
    ||||||||||||| ||||||| ||||  |||||||||||| |||||||||| ||||||  |||| |||  ||   ||||||||||||||| | |||||||    
T  12630612 ctttacggatgtcgtggaattcgaagttcaaacacagacaaatagcgcagaagttgaaacaattgcagctgatgttaacaatgttcctgcgtttgtagca 12630513  T
Q  123 gctcttcagcatcatga 139  Q
      | ||||||| |||||    
T  12630512 catgttcagcaccatga 12630496  T

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