View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704_1D_low_7 (Length: 370)
Name: NF3704_1D_low_7
Description: NF3704_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_1D_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 53478214 - 53478579
Alignment:
| Q |
1 |
gaccacaattttattcaaatgattccaagtttaactaaaacatatgatagcttaacacaaataatgacctcaaaattaagacgttgaaaacctacatatg |
100 |
Q |
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| T |
53478214 |
gaccacaattttattcaaatgattccaagtttaactaaaacatatgatagcttaacacaaataatgacctcaaaattaagacgttgaaaacctacatatg |
53478313 |
T |
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| Q |
101 |
tgaagagttatcaatcaatgaaacatttttgttgaatattaagtcaccatgtgagactcttcaattgtgacgtaccaagtaggttctctatatggattaa |
200 |
Q |
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| T |
53478314 |
-gaagagttatcaatcaatgaaacatttttgttgaatattaagtcaccatgtgagactcttcaattgtgacgtaccaagtaggttctctatatgtattaa |
53478412 |
T |
|
| Q |
201 |
ccacaagttagttgaattcaatcatgaagtaattgatgatattaaatggatttgaatcccacttctcaaaggatgatggtgaccaatatacattaaacag |
300 |
Q |
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| T |
53478413 |
ccccaagttagttgaattcaatcatgaagtaattgatgatattaaatggatttgaatcccacttctcaaaggatgatggtgaccaatatacattaaacag |
53478512 |
T |
|
| Q |
301 |
ctacgaaccttagcagtgtgtgactctagtgcaacttcactatccaccctcatgtttagcatggatca |
368 |
Q |
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| T |
53478513 |
ctacgaaccttagcagtgtgtgactctagtgcaacttcactat-caccctcatgtttagcatggatca |
53478579 |
T |
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