View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3704_2D_low_1 (Length: 460)
Name: NF3704_2D_low_1
Description: NF3704_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_2D_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 4 - 457
Target Start/End: Complemental strand, 1629687 - 1629234
Alignment:
| Q |
4 |
aacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttg |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
1629687 |
aacatgatcactgcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttg |
1629588 |
T |
|
| Q |
104 |
ttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttg |
203 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
1629587 |
ttgacaagtacaaaaccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttg |
1629488 |
T |
|
| Q |
204 |
gtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatgg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1629487 |
gtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagggtgaaatgg |
1629388 |
T |
|
| Q |
304 |
cctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacaaggttggctacaactactgtgccat |
403 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1629387 |
cctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactactgtgccat |
1629288 |
T |
|
| Q |
404 |
ttacatctggtctttgatcatttgttttatggtatggctatatctcttcattaa |
457 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
1629287 |
ttacatctggtctttgatcatttgtattttggtatagctatatctcttcattaa |
1629234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 1606392 - 1605967
Alignment:
| Q |
1 |
gctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1606392 |
gctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctg |
1606293 |
T |
|
| Q |
101 |
ttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
1606292 |
ttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctggg |
1606193 |
T |
|
| Q |
201 |
ttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
1606192 |
ttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagagtaaaa |
1606093 |
T |
|
| Q |
301 |
tggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacaaggttggctacaactactgtgc |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1606092 |
tggcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactactgtgc |
1605993 |
T |
|
| Q |
401 |
catttacatctggtctttgatcattt |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1605992 |
catttacatctggtctttgatcattt |
1605967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 10821008 - 10821435
Alignment:
| Q |
1 |
gctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10821008 |
gctaacatgatcactgcccaaggtcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctg |
10821107 |
T |
|
| Q |
101 |
ttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
10821108 |
ttgttgacaagtacaaaaccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtcagccccctagg |
10821207 |
T |
|
| Q |
201 |
ttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
10821208 |
ttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacaacaaacagggtaaat |
10821307 |
T |
|
| Q |
301 |
tggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacaaggttggctacaactactgtgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
10821308 |
tggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaaactactgtgc |
10821407 |
T |
|
| Q |
401 |
catttacatctggtctttgatcatttgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10821408 |
catttacatctggtctttgatcatttgt |
10821435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 1623514 - 1623089
Alignment:
| Q |
1 |
gctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1623514 |
gctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctg |
1623415 |
T |
|
| Q |
101 |
ttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1623414 |
ttgttgacaagtacaaaaccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctagg |
1623315 |
T |
|
| Q |
201 |
ttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||| || || ||| |
|
|
| T |
1623314 |
ttggtctccatggggtgacacagattttgctcaagatacattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaa |
1623215 |
T |
|
| Q |
301 |
tggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacaaggttggctacaactactgtgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
1623214 |
tggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactaccgtgc |
1623115 |
T |
|
| Q |
401 |
catttacatctggtctttgatcattt |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1623114 |
catttacatctggtctttgatcattt |
1623089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 4 - 422
Target Start/End: Complemental strand, 18781205 - 18780787
Alignment:
| Q |
4 |
aacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttg |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
18781205 |
aacatgatcacggcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttg |
18781106 |
T |
|
| Q |
104 |
ttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttg |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
18781105 |
ttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttg |
18781006 |
T |
|
| Q |
204 |
gtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatgg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
18781005 |
gtctccatggggtgacactgattttgctcaagacacattgtattatggcgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatgg |
18780906 |
T |
|
| Q |
304 |
cctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacaaggttggctacaactactgtgccat |
403 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
18780905 |
cctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggaccaacatggctggctacaactactgtgccat |
18780806 |
T |
|
| Q |
404 |
ttacatctggtctttgatc |
422 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18780805 |
ttacatctggtctttgatc |
18780787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 317
Target Start/End: Complemental strand, 12802771 - 12802458
Alignment:
| Q |
4 |
aacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttg |
103 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| | ||||| | ||| |||||||| || | ||| | ||||| |||| |
|
|
| T |
12802771 |
aacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttcgattcacaactctcagattagggccgcgccagatttcaagcccgttg |
12802672 |
T |
|
| Q |
104 |
ttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttg |
203 |
Q |
| |
|
| | || | ||| ||||||||||| |||| |||||| ||| || |||||| |||| |||||| | |||||||| | ||| || || || | ||||| |
|
|
| T |
12802671 |
tcgggaaattcaacaccttcttgggccggccctggcaaagatactctagagttgtggtcatgaaatcattcatggataatttggtcagtccaatgggttg |
12802572 |
T |
|
| Q |
204 |
gtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatgg |
303 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| ||| | | |||||||||||| |||| | ||| ||||| ||||||||| ||| || || | |||| |
|
|
| T |
12802571 |
gtctccatggggaggtactaattttgctcaaagcactctattttatggagagtacaagaactttgggcctggatcatcaacaagaaatagagtaagatgg |
12802472 |
T |
|
| Q |
304 |
cctggttatcatgt |
317 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12802471 |
cctggttatcatgt |
12802458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University