View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3704_2D_low_2 (Length: 389)
Name: NF3704_2D_low_2
Description: NF3704_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704_2D_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 373
Target Start/End: Complemental strand, 51303484 - 51303119
Alignment:
| Q |
5 |
cttatgtgtttgggtggtgaattttggtctttacatcttctgacttgtaacataaaaatttgattgaaagcattgcaatcagcctttctccttcttcttc |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51303484 |
cttatgtgtttgggtggtgaatcttggtctttacatcgtctgacttgtaacataaaaatttgattgaaagcattgtaatcagcctttctccttcttcttt |
51303385 |
T |
|
| Q |
105 |
ttctgttgttacaactaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaa |
204 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |
|
|
| T |
51303384 |
tgctgtt---acaactaacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtggatggaagttgtcttggttctccaattaaa |
51303288 |
T |
|
| Q |
205 |
accgggtttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagattt |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
51303287 |
accgggtttggtggagtcttgcgtgctgatgcaggtatattccttttgtgcttctttagttgcattccaggttcatatgacatcttgctaggtgagattt |
51303188 |
T |
|
| Q |
305 |
ttgctatctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
373 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
51303187 |
ttgttatctatcacgggttgatcatggcaaaggatttgggatatgtcgaccttgtttgatattctgatt |
51303119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 373
Target Start/End: Complemental strand, 5204459 - 5204089
Alignment:
| Q |
2 |
aaccttatgtgtttgggtggtgaattttggtctttacatcttctgacttgtaacat-aaaaatttgattgaaagcattgcaatcagcctttctccttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||| || ||||||| |||||||||||||| ||||| | ||| | ||| |
|
|
| T |
5204459 |
aaccttatgtgtttgggtggtgaaacttggtctttacatcgcctggcttgtaagatcaaaaattcgattgaaagcattgtaatcaactattcac---ctt |
5204363 |
T |
|
| Q |
101 |
cttcttctgttgttacaactaacaggtacatcagatgg-aacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaa |
199 |
Q |
| |
|
|| |||||| | ||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||||| || |||||||| | |
|
|
| T |
5204362 |
ctgcttctgcttttacaactaacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgtggatggaagttgccacggttctccta |
5204263 |
T |
|
| Q |
200 |
tcaaaaccgggtttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||| |||||| |
|
|
| T |
5204262 |
tcaaaaccgggtttggtggagtcttgcgtactcatgcaggtatattcctttcaggcttctctagttggattccaggttcagatgacatcttgctaggtga |
5204163 |
T |
|
| Q |
300 |
gatttttgctatctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
373 |
Q |
| |
|
||| |||||||||||||| | |||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
5204162 |
tctttctgctatctatcacgggctgatcatggcaaaggatttgggatatgcagaactttcttgctattctgatt |
5204089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 373
Target Start/End: Original strand, 38224309 - 38224563
Alignment:
| Q |
119 |
ctaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggtttggtgg |
218 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||| ||| |||| |||| |||| || | ||| | |||||||| |
|
|
| T |
38224309 |
ctaacaggtacatcagatggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctattagaacttgatttggtgg |
38224408 |
T |
|
| Q |
219 |
agtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgctatctatcac |
318 |
Q |
| |
|
||||||||| | ||| ||||||||||| || | | |||||| ||| ||||||||| |||| |||||||||| |||| ||| | |||||||||| |
|
|
| T |
38224409 |
agtcttgcgcaatgactcaggtatattcattgcgggtttctctggtttcattccaggatcatttgacatcttgttgactgagctttctattatctatcac |
38224508 |
T |
|
| Q |
319 |
gagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
373 |
Q |
| |
|
| ||||||||| ||||||||||| ||| | | ||||||||||| ||||||| |
|
|
| T |
38224509 |
aatctgatcatggagaaggatttgggttatacaaagcttgtttgctactctgatt |
38224563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 365
Target Start/End: Original strand, 38945495 - 38945747
Alignment:
| Q |
114 |
tacaactaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggttt |
213 |
Q |
| |
|
|||| |||||| |||| |||||||||| |||| ||| |||||||||||||||||||||||| ||| ||||| |||| ||| || | ||||| |||| |
|
|
| T |
38945495 |
tacagctaacaagtacgtcagatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatattagaaccgagttt |
38945594 |
T |
|
| Q |
214 |
ggtggagtcttgcgtactga-tgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgctatc |
312 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||| || | | |||||| || ||||||||| |||| |||||||||| | ||| ||| |||||| |
|
|
| T |
38945595 |
ggtggagtcttgcgtaatgactaagggtatattcattgcgagtttctctgatttcattccaggatcatttgacatcttgttggccgagctttctgctatt |
38945694 |
T |
|
| Q |
313 |
tatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgcta |
365 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||| | | ||||||||||| |
|
|
| T |
38945695 |
tatcacggtctgatcatggcgaaggatttgggttatacatagcttgtttgcta |
38945747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 10484367 - 10484180
Alignment:
| Q |
122 |
acaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggtttggtggagt |
221 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||| || |||||||||||||| ||| || | ||||||| |||| | | ||||| ||||||||| || |
|
|
| T |
10484367 |
acaggtacaagagatggaacaataataattttacagatgttattcttaatgtggatggtagctatcatggtactcctgttagaaccgagtttggtggggt |
10484268 |
T |
|
| Q |
222 |
cttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgct |
309 |
Q |
| |
|
|||||||| ||| ||||| |||||||| | ||||||| ||| |||||||| ||| |||||||| ||| ||||||| ||| |||| |
|
|
| T |
10484267 |
cttgcgtaatgacacaggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgagctttatgct |
10484180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 373
Target Start/End: Complemental strand, 10470492 - 10470230
Alignment:
| Q |
111 |
tgttacaactaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccggg |
210 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||| |||||| || ||| |||||||||||||| || || | ||||||| |||| | | || |||| |
|
|
| T |
10470492 |
tgttacgactgacaggtacatcagatggaacaataataattttacaagtgttattcttaatgtggatgatagctctcatggtactcctgttagaaacggg |
10470393 |
T |
|
| Q |
211 |
tttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgcta |
310 |
Q |
| |
|
|||||| | |||||| ||| ||| |||| | |||| ||| | ||||||| ||| |||||||| ||| || ||| | | ||||||| ||| ||||| |
|
|
| T |
10470392 |
tttggtcgggtcttgtgtaatgacgcagatttatttcttgcgggcttctccggttttattccaggttcagattacaccctattaggtgagctttctgcta |
10470293 |
T |
|
| Q |
311 |
tctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
373 |
Q |
| |
|
|| ||||| | |||||||||| || |||||| | ||||| | |||| |||||||||||||| |
|
|
| T |
10470292 |
cctgtcacgggctgatcatggctaaagatttgagttatgcaaaacttgcttgctattctgatt |
10470230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 373
Target Start/End: Complemental strand, 35061265 - 35061057
Alignment:
| Q |
165 |
tcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggtttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagt |
264 |
Q |
| |
|
|||||| |||| ||| || ||||||||| |||| | | ||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||| | |
|
|
| T |
35061265 |
tcttaacgtggatggtagctgtcatggtactcctgttagaaccgggtttggtggggtcttgcgtaatgacacaggtttattccttgcaggcttctccgat |
35061166 |
T |
|
| Q |
265 |
tgcattccaggctcatatgacatcttgccaggtgagatttttgctatctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgct |
364 |
Q |
| |
|
| |||||||| || |||| ||| ||| ||||||| ||| |||||| ||||| | | | ||||||||||| |||||||| ||||| | |||| ||||| |
|
|
| T |
35061165 |
tttattccaggttcggatgatatcctgctaggtgagctttctgctatatatcatgggctaatcatggcaaaagatttgggttatgcataacttgcttgct |
35061066 |
T |
|
| Q |
365 |
attctgatt |
373 |
Q |
| |
|
||||||||| |
|
|
| T |
35061065 |
attctgatt |
35061057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 43111960 - 43111904
Alignment:
| Q |
236 |
caggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgc |
292 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43111960 |
caggtttattccttgtggacttctctagttttattccaggctcatatgacatcttgc |
43111904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University