View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_high_1 (Length: 508)
Name: NF3705_high_1
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 402
Target Start/End: Complemental strand, 31211640 - 31211342
Alignment:
| Q |
109 |
atttggcaaaacaatttt-aatcgcctcatttgacaaaatgattttaatcgccccatttagcaaaatacatatgtattgccctaattggcacatgaagaa |
207 |
Q |
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| T |
31211640 |
atttggcaaaataatttttaatcgtcccatttggcaaaacaattttaattgccccatttgacaaaatgcatatgaatcgccctaattgacacatgaataa |
31211541 |
T |
|
| Q |
208 |
gaatcgccccatttgacgcttatgacactatgctatgaatgcaatgtattttttcttcaaatctttgtagttttatattctcaagtcacatagc---tta |
304 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
31211540 |
gaatcgccccatttgacacttatgacactatgctatgaatgcaatgtattttttcttcaaatctttatagttttatattctcaagtcacatagcttatta |
31211441 |
T |
|
| Q |
305 |
tcaattccacaaagtcagcacatctc-gaaattaataaaatttctcaaaacctctaaagacaaaatcaacaaagagttaccttaaatcactaaaatcca |
402 |
Q |
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| T |
31211440 |
tcaattccacaaagtcagcacacctctggaattaataaaatttctcaaaacctctaaagacaaaatcaacgaagagtcaccttaaatcactaaaatcca |
31211342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 177 - 399
Target Start/End: Original strand, 46002337 - 46002571
Alignment:
| Q |
177 |
atatgtattgccctaattggcacatgaagaagaatcgccccatttgacgcttatgacactat----------gctatgaatgcaatgtattttttctt-- |
264 |
Q |
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||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
46002337 |
atatgaattgccctaattagcacatgaatgtgaatcgccccatttgacacttatgacactattatatgcaatgctatgaatgcaatgtatttgttctctc |
46002436 |
T |
|
| Q |
265 |
caaatctttgtagttttatattctcaagtcacatagcttatcaattccacaaagtcagca-catctcgaaattaataaaatttctcaaaacctctaaaga |
363 |
Q |
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| T |
46002437 |
caactctttttagttttatattctcaaggcacgtaacttatcaactccacaaaatcaccaacacctc-aaattaataaaatttctcaaaacctctgagga |
46002535 |
T |
|
| Q |
364 |
caaaatcaacaaagagttaccttaaatcactaaaat |
399 |
Q |
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||||||||||||||||| ||||| |||| |||||| |
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| T |
46002536 |
caaaatcaacaaagagtcaccttttatcaataaaat |
46002571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 31211675 - 31211608
Alignment:
| Q |
20 |
cggatatccaattagcataacaatataatcgctccatttggaaaaataattttaaatcaccccatttg |
87 |
Q |
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| T |
31211675 |
cggatatccaattggtataacaatataatcgctccatttggcaaaataatttttaatcgtcccatttg |
31211608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 31211625 - 31211573
Alignment:
| Q |
96 |
ttttaatctccctatttggcaaaacaattttaatcgcctcatttgacaaaatg |
148 |
Q |
| |
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| T |
31211625 |
ttttaatcgtcccatttggcaaaacaattttaattgccccatttgacaaaatg |
31211573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 471 - 499
Target Start/End: Complemental strand, 31211273 - 31211245
Alignment:
| Q |
471 |
agtataattatcaaaattcacatattctt |
499 |
Q |
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| T |
31211273 |
agtataattatcaaaattcacatattctt |
31211245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 235 - 372
Target Start/End: Complemental strand, 24423639 - 24423499
Alignment:
| Q |
235 |
ctatgctatgaatgcaatgtattttt---tcttcaaatctttgtagttttatattctcaagtcacatagcttatcaattccacaaagtcagcacatctcg |
331 |
Q |
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||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| | | ||| |||| |
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| T |
24423639 |
ctatgctatgaataaaatgtttttttgtgtcttcaaatctttatagttttatattctcaagtcacatagtttaccaattccacaaaattaccacccctcg |
24423540 |
T |
|
| Q |
332 |
aaattaataaaatttctcaaaacctctaaagacaaaatcaa |
372 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
24423539 |
aaattaataaaatttctcaaaatctctaaagacaaaatcaa |
24423499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 24423770 - 24423702
Alignment:
| Q |
98 |
ttaatctccctatttggcaaaacaattttaatcgcctcatttgacaaaatgattttaatcgccccattt |
166 |
Q |
| |
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|||||| ||| |||||||| |||||| |||||||| |||||||||||||||||||||| |||| |||| |
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|
| T |
24423770 |
ttaatcaccccatttggcataacaatattaatcgctccatttgacaaaatgattttaattgccctattt |
24423702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 11649999 - 11650068
Alignment:
| Q |
98 |
ttaatctccctatttggcaaaacaatttt-aatcgcctcatttgacaaaatgattttaatcgccccattt |
166 |
Q |
| |
|
|||||| ||| ||||||||||| |||||| |||||||||||||| |||||| ||||| |||||||||||| |
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| T |
11649999 |
ttaatcgccccatttggcaaaataatttttaatcgcctcatttggcaaaataattttcatcgccccattt |
11650068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 11650025 - 11650092
Alignment:
| Q |
96 |
ttttaatctccctatttggcaaaacaattttaatcgcctcatttgacaaaatgattttaatcgcccca |
163 |
Q |
| |
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|||||||| || ||||||||||| |||||| |||||| ||||||| ||||| ||||||||||||||| |
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| T |
11650025 |
ttttaatcgcctcatttggcaaaataattttcatcgccccatttgataaaataattttaatcgcccca |
11650092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 11649981 - 11650099
Alignment:
| Q |
27 |
ccaattagcataacaatat-aatcgctccatttggaaaaataattttaaatcaccccattt-gaaaaatgattttaatctccctatttggcaaaacaatt |
124 |
Q |
| |
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|||||| |||||| ||||| |||||| |||||||| ||||||||||| |||| || ||||| | ||||| ||||| ||| ||| ||||| |||| |||| |
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| T |
11649981 |
ccaattggcataaaaatattaatcgccccatttggcaaaataatttttaatcgcctcatttggcaaaataattttcatcgccccatttgataaaataatt |
11650080 |
T |
|
| Q |
125 |
ttaatcgcctcatttgaca |
143 |
Q |
| |
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||||||||| || |||||| |
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| T |
11650081 |
ttaatcgccccaattgaca |
11650099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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