View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3705_high_14 (Length: 248)

Name: NF3705_high_14
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3705_high_14
NF3705_high_14
[»] chr5 (3 HSPs)
chr5 (25-240)||(25101704-25101919)
chr5 (25-240)||(25160797-25161012)
chr5 (24-220)||(42861619-42861821)
[»] chr8 (2 HSPs)
chr8 (25-240)||(3189214-3189432)
chr8 (79-240)||(22635807-22635968)
[»] chr1 (2 HSPs)
chr1 (7-220)||(25921677-25921894)
chr1 (24-197)||(18472711-18472890)
[»] chr7 (1 HSPs)
chr7 (100-220)||(48653597-48653717)
[»] chr6 (1 HSPs)
chr6 (24-218)||(13773185-13773385)
[»] chr2 (4 HSPs)
chr2 (100-220)||(35670552-35670672)
chr2 (36-179)||(41340068-41340212)
chr2 (59-182)||(28266950-28267077)
chr2 (59-220)||(12774192-12774357)
[»] chr4 (2 HSPs)
chr4 (70-222)||(13652788-13652942)
chr4 (70-222)||(13660913-13661067)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 25101919 - 25101704
Alignment:
Q  25 tatggaactgaaataataagaacaataagacttatatgagagttttcttttgtcatgtgcatgatgtggtatcaatttctgtgtggtagtttaagtggcg 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||| | ||||||||||    
T  25101919 tatggaactgaaataataagaacaataagacttttatgagagttttcatttgtcatgtgcatgatgtggtattattttctgtgtggttgcttaagtggcg 25101820  T
Q  125 gggattgcatccatttgattctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataattattggtggtgccttagtggcgggttgc 224  Q
    ||||||||||| |||||||| |||||| ||||||||||||  ||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25101819 gggattgcatctatttgattatcatgatatatgcatttttgatgtaccttagtggcgggttaaacttataattcttggtgttgccttagtggcgggttgc 25101720  T
Q  225 aattacattctctgtg 240  Q
    | ||| ||||| ||||    
T  25101719 acttatattctgtgtg 25101704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 25161012 - 25160797
Alignment:
Q  25 tatggaactgaaataataagaacaataagacttatatgagagttttcttttgtcatgtgcatgatgtggtatcaatttctgtgtggtagtttaagtggcg 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||| | ||||||||||    
T  25161012 tatggaactgaaataataagaacaataagacttttatgagagttttcatttgtcatgtgcatgatgtggtattattttctgtgtggttgcttaagtggcg 25160913  T
Q  125 gggattgcatccatttgattctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataattattggtggtgccttagtggcgggttgc 224  Q
    ||||||||||| |||||||| |||||| ||||||||||||  ||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25160912 gggattgcatctatttgattatcatgatatatgcatttttgatgtaccttagtggcgggttaaacttataattcttggtgttgccttagtggcgggttgc 25160813  T
Q  225 aattacattctctgtg 240  Q
    | ||| ||||| ||||    
T  25160812 acttatattctgtgtg 25160797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 42861619 - 42861821
Alignment:
Q  24 ttatggaactgaaataataagaaca---ataagacttatatgagagttttcttttgtcatgtgcatgatgtggt---atcaatttctgtgtggtagttta 117  Q
    |||| |||||||||||||||||| |   || || ||| ||||| || |||||||||||||||  | ||||| ||   || | |||| ||||||| || ||    
T  42861619 ttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttcagtgtggttgtcta 42861718  T
Q  118 agtggcggggattgcatccatttg-attctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataattattggtggtgccttagtgg 216  Q
    ||||||||| |||||||| ||||  ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||  ||||    
T  42861719 agtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctatgtgg 42861817  T
Q  217 cggg 220  Q
    ||||    
T  42861818 cggg 42861821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 3189432 - 3189214
Alignment:
Q  25 tatggaactgaaataataagaacaataagacttatatgagagttttcttttgtcatgtgcatgatgtggtatcaatttctgtgtggtagtttaagtggcg 124  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||||||||| |||| | |||||||||||| |  |||||||||    
T  3189432 tatggaactgaaataataagaacaacaagagttttatgagagttttcttttgtcacgtgcatgatgtagtattactttctgtgtggttgcctaagtggcg 3189333  T
Q  125 gggattgcatccatttgattctcatgacatatgcatttttcgtgtgccttagtggcggg---ttaaacttataattattggtggtgccttagtggcgggt 221  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  3189332 gggattgcatctatttgattctcatgacatatgcatttttggtgtgccttagtggcgggtaattaaacttataattcttggtggtgccttagtggcgggt 3189233  T
Q  222 tgcaattacattctctgtg 240  Q
    |||||||| ||||| ||||    
T  3189232 tgcaattatattctgtgtg 3189214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 22635968 - 22635807
Alignment:
Q  79 atgtgcatgatgtggtatcaatttctgtgtggtagtttaagtggcggggattgcatccatttgattctcatgacatatgcatttttcgtgtgccttagtg 178  Q
    |||||||||||||||||| | |||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||| ||    
T  22635968 atgtgcatgatgtggtattactttctgtgtggttgcctaagtggcggggattgcatctatttgattctcatgacatatgcatttttggagtgctttaatg 22635869  T
Q  179 gcgggttaaacttataattattggtggtgccttagtggcgggttgcaattacattctctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  22635868 gcgggttaaacttataattattggtggtgccttagtggcaggttgcaattatattctgtgtg 22635807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 25921677 - 25921894
Alignment:
Q  7 cataaaatttgggactattatggaactgaaataataaga---acaataagacttatatgagagttttcttttgtcatgtgcatgatgtggtatcaatttc 103  Q
    |||||||||||||| | ||||||||||||||||||||||   |||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||    
T  25921677 cataaaatttgggattgttatggaactgaaataataagaagaacaataagacttttatgagagatttcttttgtcatgtgcatgatgtggtattactttc 25921776  T
Q  104 tgtgtggtagtttaagtggcggggattgcatcca-tttgattctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataattattgg 202  Q
    |||||| | |  ||||||||||||||||| || | ||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |    
T  25921777 tgtgtgattgcctaagtggcggggattgcctctatttttattatcatgacatatgcatttttggtgtgccttagtggtgggttaaacttataattctttg 25921876  T
Q  203 tggtgccttagtggcggg 220  Q
    |||||||| |||| ||||    
T  25921877 tggtgcctaagtgacggg 25921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 18472890 - 18472711
Alignment:
Q  24 ttatggaactgaaataataagaaca---ataagacttatatgagagttttcttttgtcatgtgcatgatgtggt---atcaatttctgtgtggtagttta 117  Q
    |||| |||||||||||||||||| |   || || ||| ||||| || |||||||||||||||  | ||||| ||   || | ||||||| |||| |  ||    
T  18472890 ttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgccta 18472791  T
Q  118 agtggcggggattgcatccatttg-attctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataatt 197  Q
    ||||||||| |||||||| ||||  ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  18472790 agtggcggg-attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataatt 18472711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 48653717 - 48653597
Alignment:
Q  100 tttctgtgtggtagtttaagtggcggggattgcatccatttg-attctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataatta 198  Q
    |||||||||||| |  ||||||||||| |||||||| ||||  ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||     
T  48653717 tttctgtgtggttgcctaagtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattc 48653619  T
Q  199 ttggtggtgccttagtggcggg 220  Q
    || ||||||||| |||||||||    
T  48653618 tttgtggtgcctaagtggcggg 48653597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 13773385 - 13773185
Alignment:
Q  24 ttatggaactgaaataataagaaca---ataagacttatatgagagttttcttttgtcatgtgcatgatgtgg---tatcaatttctgtgtggtagttta 117  Q
    |||| |||||||||||||||||| |   || || ||| ||||| || |||||||||||||||  | ||||| |   ||| | |||||||||||| |  ||    
T  13773385 ttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataggatgttgagttattactttctgtgtggttgccta 13773286  T
Q  118 agtggcggggattgcatccatttg-attctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataattattggtggtgccttagtgg 216  Q
    ||||||||| |||||||| ||||  ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  13773285 agtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctaagtgg 13773187  T
Q  217 cg 218  Q
    ||    
T  13773186 cg 13773185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 35670672 - 35670552
Alignment:
Q  100 tttctgtgtggtagtttaagtggcggggattgcatccatttg-attctcatgacatatgcatttttcgtgtgccttagtggcgggttaaacttataatta 198  Q
    |||||||||||| |  ||||||||||| |||||||| ||||  ||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||     
T  35670672 tttctgtgtggttgcctaagtggcggg-attgcatctatttttattatcatgacataagaatttttggtgtgccttagtggcgggttaaacttataattc 35670574  T
Q  199 ttggtggtgccttagtggcggg 220  Q
    || |||||||||  ||||||||    
T  35670573 tttgtggtgcctatgtggcggg 35670552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 41340212 - 41340068
Alignment:
Q  36 aataataagaacaataagacttatatgagagttttcttttgtcatgtgcatgatgtggtatcaatttctgtgtggtagtttaagtggcggggattgcatc 135  Q
    ||||||||||  ||||||  || ||||| || ||| ||||||| ||||||||||||||||| | |||||||||||| || ||||| | |||||||||||     
T  41340212 aataataagagaaataagctttttatgaaagattttttttgtcgtgtgcatgatgtggtattattttctgtgtggttgtctaagttgtggggattgcata 41340113  T
Q  136 ca-tttgattctcatgacatatgcatttttcgtgtgccttagtgg 179  Q
     | ||| |||||||| | || ||||||||| ||||||||||||||    
T  41340112 tatttttattctcataatatgtgcatttttggtgtgccttagtgg 41340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 28267077 - 28266950
Alignment:
Q  59 tatgagagttttcttttgtcatgtgcatgatgtggt---atcaatttctgtgtggtagtttaagtggcggggattgcatccatttg-attctcatgacat 154  Q
    ||||| || ||||||||||||||| |||||||| ||   || | |||||||||||| |  |||||||||| ||||||||| ||||  ||| |||||||||    
T  28267077 tatgaaagatttcttttgtcatgtacatgatgttgtgttattactttctgtgtggttgcctaagtggcggagattgcatctatttttattatcatgacat 28266978  T
Q  155 atgcatttttcgtgtgccttagtggcgg 182  Q
    | |||||||| |||||||||||||||||    
T  28266977 aagcatttttggtgtgccttagtggcgg 28266950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 12774357 - 12774192
Alignment:
Q  59 tatgagagttttcttttgtcatgtgcatgatgtggtatcaat---ttctgtgtggtagtttaagtggcggggattgcatccatttg-attctcatgacat 154  Q
    ||||| || ||||||||||||||| |||||||| |||| | |   ||||||||||| |  ||||||||||||||||||||  |||  ||| |||||||||    
T  12774357 tatgaaagatttcttttgtcatgtacatgatgttgtattattactttctgtgtggttgcctaagtggcggggattgcatctgtttttattatcatgacat 12774258  T
Q  155 atgcatttttcgtgtgccttagtggcgggttaaacttataattattggtggtgccttagtggcggg 220  Q
    | |||||| | |||||||||||||||||| |||  | |||  | || ||||||||| |||||||||    
T  12774257 aagcatttgtggtgtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcggg 12774192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 13652788 - 13652942
Alignment:
Q  70 tcttttgtcatgtgcatgat---gtggtatcaatttctgtgtggtagtttaagtggcggggattgcatccat-ttgattctcatgacatatgcatttttc 165  Q
    ||||||||||||||||||||   ||| ||| | ||| |||||| | |  | |||||||||||||||||| |  || ||| || ||||||||| ||||       
T  13652788 tcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcggggattgcatctacctttattatcgtgacatatgtatttg-- 13652885  T
Q  166 gtgtgccttagtggcgggttaaacttataattattggtggtgccttagtggcgggtt 222  Q
    ||||||||| |||||||||||||||||| ||| || ||||| ||| |||||||||||    
T  13652886 gtgtgcctttgtggcgggttaaacttattattctttgtggtacctaagtggcgggtt 13652942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 13660913 - 13661067
Alignment:
Q  70 tcttttgtcatgtgcatgat---gtggtatcaatttctgtgtggtagtttaagtggcggggattgcatccat-ttgattctcatgacatatgcatttttc 165  Q
    ||||||||||||||||||||   ||| ||| | ||| |||||| | |  | |||||||||||||||||| |  || ||| || ||||||||| ||||       
T  13660913 tcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcggggattgcatctacctttattatcgtgacatatgtatttg-- 13661010  T
Q  166 gtgtgccttagtggcgggttaaacttataattattggtggtgccttagtggcgggtt 222  Q
    ||||||||| |||||||||||||||||| ||| || ||||| ||| |||||||||||    
T  13661011 gtgtgcctttgtggcgggttaaacttattattctttgtggtacctaagtggcgggtt 13661067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University