View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3705_high_4 (Length: 403)
Name: NF3705_high_4
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 44992698 - 44993072
Alignment:
| Q |
15 |
ttcattattgatgcagcctgaatgttttcatacattagatgaaggataagaatcaaccacataaaaagcaaaaagtttggattcgtctccannnnnnnnn |
114 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44992698 |
ttcattattgatgcagcctgaacgttttcatacattagatgaaggataagaatcaaccacataaaaagcaaaaagtttggattcgtctccattttttttt |
44992797 |
T |
|
| Q |
115 |
-caattaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataata |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44992798 |
tcaattaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataata |
44992897 |
T |
|
| Q |
214 |
ctttttgatatacttcttcttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatgatacacaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44992898 |
ctttttgatatacttcttcttgccaatcactcccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatgatacacaca |
44992997 |
T |
|
| Q |
314 |
ttagcatacaaagctaataaaatgtggaaatcttctgcttcttctgttttcactttgctttttaatagatataga |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44992998 |
ttagcatacaaagctaataaaatgtggaaatcttctgcttcttctgttttcactttactttttaatagatataga |
44993072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 117 - 346
Target Start/End: Original strand, 44981284 - 44981512
Alignment:
| Q |
117 |
attaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactt |
216 |
Q |
| |
|
||||||||| ||| |||||||||| ||| | |||| |||||||| || ||||| ||||||| ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
44981284 |
attaagatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaatccaatttacccaataaataaagatgagaaagtagcataatacat |
44981383 |
T |
|
| Q |
217 |
tttgatatacttcttcttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatgatacacacatta |
316 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||| ||||| || |||||| |||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
44981384 |
tttgatatatttcttcttgccaatcaccaccatttggttgtccggtctgtgctactgaatccagagaatctaca-aagatatattatgatacacacatta |
44981482 |
T |
|
| Q |
317 |
gcatacaaagctaataaaatgtggaaatct |
346 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
44981483 |
gcatacaaggctaataaaatgtggaaatct |
44981512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 133 - 346
Target Start/End: Original strand, 44965088 - 44965306
Alignment:
| Q |
133 |
gcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttcttc |
232 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44965088 |
gcacaaaagccatttgtttgaaaattttctgttgttcaacccaatttacccaagaaataaagttgagaaagtagcatattactttttgatacacttcttc |
44965187 |
T |
|
| Q |
233 |
ttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatga------tacacacattagcatacaaag |
326 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| || | ||||||||| |||||||| || |
|
|
| T |
44965188 |
ttgccaatcacccccacttgtctgtccagtctgtgctgttgaatccatagaatctacaacagatatatcattaactatgtacacacataagcatacatag |
44965287 |
T |
|
| Q |
327 |
ctaataaaatgtggaaatct |
346 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
44965288 |
ctaa-aaaatgtggaaatct |
44965306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 44980173 - 44980320
Alignment:
| Q |
137 |
aaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttcttcttgc |
236 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44980173 |
aaaagccatttatttgacaattttcagttgataaacccaattttcccaagaaataaagataagaaagtagcataataccttttgatatacttcttcttgc |
44980272 |
T |
|
| Q |
237 |
caatcacccccacttggctgtccagtatgtgctgttgaatccatagaa |
284 |
Q |
| |
|
||||||||||||||||||| |||||| | ||| |||||||||| |||| |
|
|
| T |
44980273 |
caatcacccccacttggctttccagtctttgcagttgaatccagagaa |
44980320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 44980021 - 44980112
Alignment:
| Q |
15 |
ttcattattgatgcagcctgaatgttttcatacattagatgaaggataagaatca-accacataaaaagcaaaaagtttggattcgtctcca |
105 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| || |||||||||||||||||||||| || || ||||||||||||| |||||||||||||| |
|
|
| T |
44980021 |
ttcattatagatgcagcccaaatcttttcctatattagatgaaggataagaatcatcccccaagaaaagcaaaaagtgtggattcgtctcca |
44980112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University