View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3705_high_7 (Length: 350)

Name: NF3705_high_7
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3705_high_7
NF3705_high_7
[»] chr2 (8 HSPs)
chr2 (20-262)||(35275807-35276049)
chr2 (20-159)||(35281820-35281959)
chr2 (20-159)||(35290665-35290804)
chr2 (20-157)||(35307789-35307926)
chr2 (20-157)||(35322790-35322927)
chr2 (58-157)||(35312577-35312676)
chr2 (304-350)||(35275751-35275797)
chr2 (284-313)||(42223029-42223058)
[»] chr5 (2 HSPs)
chr5 (209-261)||(18232084-18232138)
chr5 (284-321)||(17190497-17190534)
[»] chr7 (1 HSPs)
chr7 (209-262)||(9689222-9689275)
[»] chr4 (1 HSPs)
chr4 (209-262)||(13555599-13555652)
[»] chr1 (1 HSPs)
chr1 (232-261)||(44228295-44228324)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 35276049 - 35275807
Alignment:
Q  20 ggtgagaaaaatgctggacctaaccaaggttcagctaggggttttgaagtaattgacacaattaaaaccagtgttgaaactgcttgcaaagccactgtct 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  35276049 ggtgagaaaaattctggacctaaccaaggttcagctaggggttttgaagtgattgatacaattaaaaccagtgttgaaactgcttgcaaagccaccgtct 35275950  T
Q  120 cttgtgctgatattcttgcacttgcaactagagatggaatagcgttggtaagtcatatatatgtgtcctataagacatgaaatataaactagggttaata 219  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35275949 cttgtgctgatattcttgcacttgcaactagagatggaattgcattggtaagtcatatatgtgtgtcctataagacatgaaatataaactagggttaata 35275850  T
Q  220 tatgtttaacctctataatattaatggtttctggtttacccct 262  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35275849 tatgtttaacctctataatattaatggtttctggtttacccct 35275807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 35281959 - 35281820
Alignment:
Q  20 ggtgagaaaaatgctggacctaaccaaggttcagctaggggttttgaagtaattgacacaattaaaaccagtgttgaaactgcttgcaaagccactgtct 119  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||  |||||||||| ||||||||| |||||||||  ||||||||||    
T  35281959 ggtgagaaaaatgctggacctaacaaaaattcagctaggggttttgaagtgattgatgcaattaaaactagtgttgaagctgcttgcagtgccactgtct 35281860  T
Q  120 cttgtgctgatattcttgcacttgcaactagagatggaat 159  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35281859 cttgtgctgatattcttgcacttgcaactagagatggaat 35281820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 35290804 - 35290665
Alignment:
Q  20 ggtgagaaaaatgctggacctaaccaaggttcagctaggggttttgaagtaattgacacaattaaaaccagtgttgaaactgcttgcaaagccactgtct 119  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||  |||||||||| ||||||||| |||||||||  ||||||||||    
T  35290804 ggtgagaaaaatgctggacctaacaaaaattcagctaggggttttgaagtgattgatgcaattaaaactagtgttgaagctgcttgcagtgccactgtct 35290705  T
Q  120 cttgtgctgatattcttgcacttgcaactagagatggaat 159  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35290704 cttgtgctgatattcttgcacttgcaactagagatggaat 35290665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 35307926 - 35307789
Alignment:
Q  20 ggtgagaaaaatgctggacctaaccaaggttcagctaggggttttgaagtaattgacacaattaaaaccagtgttgaaactgcttgcaaagccactgtct 119  Q
    |||||||||||||| | ||||||| ||  ||||||||||||||| ||||| |||||||| |||||||||||||||||| || ||||||| |||||||| |    
T  35307926 ggtgagaaaaatgccgcacctaacaaaaattcagctaggggtttcgaagtgattgacaccattaaaaccagtgttgaagcttcttgcaatgccactgtat 35307827  T
Q  120 cttgtgctgatattcttgcacttgcaactagagatgga 157  Q
    |||||||||||||||| ||||||||| | |||||||||    
T  35307826 cttgtgctgatattctagcacttgcagcaagagatgga 35307789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 35322927 - 35322790
Alignment:
Q  20 ggtgagaaaaatgctggacctaaccaaggttcagctaggggttttgaagtaattgacacaattaaaaccagtgttgaaactgcttgcaaagccactgtct 119  Q
    |||||||||||||| | ||||||| ||   |||||||||||||| ||||| ||||| || |||||||| ||||||||| || | ||||| |||||||| |    
T  35322927 ggtgagaaaaatgccgcacctaacaaaaactcagctaggggtttcgaagtgattgataccattaaaactagtgttgaagcttcatgcaatgccactgtat 35322828  T
Q  120 cttgtgctgatattcttgcacttgcaactagagatgga 157  Q
    |||||||||||||||| ||||||||| | |||||||||    
T  35322827 cttgtgctgatattctagcacttgcagcaagagatgga 35322790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 35312676 - 35312577
Alignment:
Q  58 gggttttgaagtaattgacacaattaaaaccagtgttgaaactgcttgcaaagccactgtctcttgtgctgatattcttgcacttgcaactagagatgga 157  Q
    |||||| ||||| ||||| |  ||||||| |||||||||| || | ||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||    
T  35312676 gggtttcgaagtgattgataacattaaaaacagtgttgaagcttcatgcaatgccactgtctcttgtgccgatattctagcacttgcagcaagagatgga 35312577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 35275797 - 35275751
Alignment:
Q  304 atattaaccctatatataaacaatatgtttatcctataaccatgttt 350  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35275797 atattaaccctatatataaacaatatgtgtatcctataaccatgttt 35275751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 42223058 - 42223029
Alignment:
Q  284 aatattataggggtaaacatatattaaccc 313  Q
    ||||||||||||||||||||||||||||||    
T  42223058 aatattataggggtaaacatatattaaccc 42223029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 18232138 - 18232084
Alignment:
Q  209 tagggttaatatatgtttaacc--tctataatattaatggtttctggtttacccc 261  Q
    ||||||||||||||||||| ||  ||| |||||||| ||||||||||||||||||    
T  18232138 tagggttaatatatgtttaccccctctgtaatattagtggtttctggtttacccc 18232084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 17190534 - 17190497
Alignment:
Q  284 aatattataggggtaaacatatattaaccctatatata 321  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  17190534 aatattataggggtaaacatatattaaacatatatata 17190497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 9689222 - 9689275
Alignment:
Q  209 tagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 262  Q
    ||||||||||||||||||| ||||| ||||||||  | |||| |||||||||||    
T  9689222 tagggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct 9689275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 13555599 - 13555652
Alignment:
Q  209 tagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 262  Q
    ||||||||||||||||||| ||||| ||||||||  | |||| |||||||||||    
T  13555599 tagggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct 13555652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 44228295 - 44228324
Alignment:
Q  232 ctataatattaatggtttctggtttacccc 261  Q
    ||||||||||||||||||||||||||||||    
T  44228295 ctataatattaatggtttctggtttacccc 44228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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