View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_high_8 (Length: 326)
Name: NF3705_high_8
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 54218267 - 54218559
Alignment:
| Q |
11 |
caaagggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcaagaaggggcgttatacatgtaaaaccattgatgattcaa |
110 |
Q |
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| T |
54218267 |
caaagggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcgagaaggggcgttatacatgtaaaaccattgatgattcaa |
54218366 |
T |
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| Q |
111 |
ttttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacga |
210 |
Q |
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| T |
54218367 |
ttttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacga |
54218466 |
T |
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| Q |
211 |
tcaagtttttgatctgcgttccttacaataacttgacattcctcgtaggacaactagctacatatatattcctttgttttagcctttagtaggaggaagg |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54218467 |
tcaagtttttgatctgtgttccttacaataacttgacattcttcgtaggacaactagctacatatatat-------ttttagcctttagtaggaggaagg |
54218559 |
T |
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