View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_low_11 (Length: 312)
Name: NF3705_low_11
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 52473590 - 52473838
Alignment:
| Q |
18 |
aataactattggctactaagaaatgtcgtaaatgcacagtgaaatataatcacttgtaagtgatacacataatattaatttaggggctaatttggaataa |
117 |
Q |
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| T |
52473590 |
aataactattggctactaagaaatgtcgtaaatgcacagtgaaatataatcacttgtaagtgatacacataatattaatttaggggctaatttggaataa |
52473689 |
T |
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| Q |
118 |
attaattattgtttcattgaaaaataaaacgacatttattttggaacaatttttgtaacggaaggagtacatggaaatgttaaagggttttattcagtct |
217 |
Q |
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| T |
52473690 |
attaattattgtttcattgaaaaataaaacgacatttattttggaacaatttttgtaacggaaggagtacatggaaatgttaaagggttttattcagtct |
52473789 |
T |
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| Q |
218 |
tttctgaagtatattaggaggatataacattatagcttttccacctcaa |
266 |
Q |
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| T |
52473790 |
tttctgaagtatattaggaggatataacattatagcttttccacctcaa |
52473838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 8336201 - 8336305
Alignment:
| Q |
60 |
aatataatcacttgtaagtgatacacataatattaatttaggggctaatttggaataaattaattattgtttcattgaaaa-ataaaacgacatttattt |
158 |
Q |
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| T |
8336201 |
aatataatgacttgaaagtgatgcacacactattaatttaagag-taaataggaataaataaattaatattactttgaaaagataaaacgacatttattt |
8336299 |
T |
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| Q |
159 |
tggaac |
164 |
Q |
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| T |
8336300 |
tggaac |
8336305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 20508219 - 20508251
Alignment:
| Q |
109 |
ttggaataaattaattattgtttcattgaaaaa |
141 |
Q |
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| T |
20508219 |
ttggaataaattaattaatgtttcattgaaaaa |
20508251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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