View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_low_12 (Length: 294)
Name: NF3705_low_12
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 3190384 - 3190528
Alignment:
| Q |
47 |
ttgagaagacggtaacttgtagtttcaaattgttgacagggaaatgatttccaatttgtaagttatgaaaatttggctgagtattctaagtggggtgcat |
146 |
Q |
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| T |
3190384 |
ttgagaaaacggtagcttgtagtttcaa-ttgttgacggggaaatgatttccgatttgtgagttaagaaaatttggctgagtattctacgtggggtgcat |
3190482 |
T |
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| Q |
147 |
ctctgtacttgaaattggaaatataaagttctggtagttgagagga |
192 |
Q |
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| T |
3190483 |
ctctgtactggaaattggaaatataaagtgctggtagttgagagga |
3190528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 3190558 - 3190650
Alignment:
| Q |
184 |
ttgagaggagtggggagttgtttgaccaagtaaatacgcagaggagttacaagatttaaccctagaccaagtctagcacacgtacaacccctc |
276 |
Q |
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| T |
3190558 |
ttgagaggaatgggaagttgtttgaccaagtacatacgcagaggagttacaagatttaaccctagaccaagtctagcacacgtacaacccctc |
3190650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22636104 - 22636151
Alignment:
| Q |
1 |
ataatatgttacaccaaaccgcatagctattgatcatttttcctagtt |
48 |
Q |
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| T |
22636104 |
ataatatgttacaccaaaccgcatagctattgataatttttcctagtt |
22636151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 17852193 - 17852319
Alignment:
| Q |
62 |
cttgtagtttcaaattgttgacagggaaatgatttccaatttgtaagttatgaaaatttggctgagtattctaagtggggtgcatctctgtacttgaaat |
161 |
Q |
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| T |
17852193 |
cttgtagtttcaattt-ttggcaggtaaatgttttcaattttgtgagattagaaaatttggctgagtattgtaggtgaggtgtatttctgtactggaaat |
17852291 |
T |
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| Q |
162 |
tggaaatataaagttctggtagttgaga |
189 |
Q |
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| T |
17852292 |
tggaaatatgaagtggtggtagttgaga |
17852319 |
T |
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